PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G041400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 339aa    MW: 35665.7 Da    PI: 5.0065
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G041400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.9e-182170255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++ GVr+++ +grWvAeI+d      ++ r +lg+f+tae+Aa+a++ a+++l+g
  Manes.13G041400.1.p 21 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDDAARALRG 70
                         689******.7*********....4456*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-282178IPR001471AP2/ERF domain
PROSITE profilePS5103220.4552178IPR001471AP2/ERF domain
CDDcd000189.16E-172178No hitNo description
PfamPF008473.6E-122170IPR001471AP2/ERF domain
SMARTSM003809.0E-362184IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-202279IPR016177DNA-binding domain
PRINTSPR003671.1E-72233IPR001471AP2/ERF domain
PRINTSPR003671.1E-74460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGISVDGFRG RKKSSSRGHH RFVGVRQRPS GRWVAEIKDS LQKVRLWLGT FDTAEDAARA  60
YDDAARALRG DNARTNFELP LPALNSGGGL AGAADKIEPF SFEDVCGSGI EEEGILGALK  120
AKLFDGKGLR VLPPVSCSSG MQFAGNVKKD MASTGENVPH AIGLGTLNPN QGSCSGNPAG  180
FSKADLLSDH GNMVTGHLPA QWNQLCQTSA PTNAVWSNEP AYEVASWPTQ MNHIPESAAA  240
FGSDAETTAT TTSTWQLSVA TEPTIDIPYS NNPCTVELQT SRIGGMNVMS LPISQIDGIA  300
DGVLLSEQQF VHCENSGWAG VNGSWDSLLY GSSVLGPG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1419771271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G041400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021631636.10.0uncharacterized protein LOC110629078
TrEMBLA0A2C9UPT20.0A0A2C9UPT2_MANES; Uncharacterized protein
STRINGcassava4.1_030547m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113333035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-15related to AP2 11