![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.13G041400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 339aa MW: 35665.7 Da PI: 5.0065 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.3 | 3.9e-18 | 21 | 70 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r +lg+f+tae+Aa+a++ a+++l+g Manes.13G041400.1.p 21 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDDAARALRG 70 689******.7*********....4456*************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.0E-28 | 21 | 78 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.455 | 21 | 78 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.16E-17 | 21 | 78 | No hit | No description |
Pfam | PF00847 | 3.6E-12 | 21 | 70 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.0E-36 | 21 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.95E-20 | 22 | 79 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-7 | 22 | 33 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-7 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 339 aa Download sequence Send to blast |
MGISVDGFRG RKKSSSRGHH RFVGVRQRPS GRWVAEIKDS LQKVRLWLGT FDTAEDAARA 60 YDDAARALRG DNARTNFELP LPALNSGGGL AGAADKIEPF SFEDVCGSGI EEEGILGALK 120 AKLFDGKGLR VLPPVSCSSG MQFAGNVKKD MASTGENVPH AIGLGTLNPN QGSCSGNPAG 180 FSKADLLSDH GNMVTGHLPA QWNQLCQTSA PTNAVWSNEP AYEVASWPTQ MNHIPESAAA 240 FGSDAETTAT TTSTWQLSVA TEPTIDIPYS NNPCTVELQT SRIGGMNVMS LPISQIDGIA 300 DGVLLSEQQF VHCENSGWAG VNGSWDSLLY GSSVLGPG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-14 | 19 | 77 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.13G041400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021631636.1 | 0.0 | uncharacterized protein LOC110629078 | ||||
TrEMBL | A0A2C9UPT2 | 0.0 | A0A2C9UPT2_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_030547m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11333 | 30 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G19790.1 | 4e-15 | related to AP2 11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.13G041400.1.p |