PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G041100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 624aa    MW: 68629.8 Da    PI: 4.51
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G041100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.42.7e-5391411128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lp GfrF+Ptdeel+++yL+ k++g++ e+ evi+evd++k+ePwdLp  + +k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgk
  Manes.13G041100.1.p   9 LPLGFRFRPTDEELINHYLRLKINGRNSEV-EVIPEVDVCKWEPWDLPglSVIKTDDPEWFFFCPRDRKYPNGQRSNRATDAGYWKATGK 97 
                          699************************999.99***************6447888899******************************** PP

                  NAM  89 dkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d+++ ++    + + +g+kktLvfy+grapkge+t+W+mheyr+
  Manes.13G041100.1.p  98 DRTIRARksgcNPTSIGMKKTLVFYRGRAPKGERTNWIMHEYRA 141
                          *****9866665666***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-615164IPR003441NAC domain
PROSITE profilePS5100557.8749164IPR003441NAC domain
PfamPF023651.1E-2710140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MGVLSMESLP LGFRFRPTDE ELINHYLRLK INGRNSEVEV IPEVDVCKWE PWDLPGLSVI  60
KTDDPEWFFF CPRDRKYPNG QRSNRATDAG YWKATGKDRT IRARKSGCNP TSIGMKKTLV  120
FYRGRAPKGE RTNWIMHEYR ATLKDLDGSA PGQGAFVLCR LFRKPEEKIE IVKYDEVDQS  180
GYSLTTSKSS PDDTSSDLVQ ETATSAVQPR KPSEGIGRWL IDETDNMTTP SALLPVDSCC  240
NSLSDVEDHV AEMTTMVHPQ LEENSCQFGA TPGEIDCKVF SPMQPQIQED IAHYMDSPYA  300
DFGNDHNGFH FLDGTSEPDV SLTELLGEVF NNNDDFSGEE STSQKNPAVG SETDLSGHRP  360
PVNFRVMDSG ICHGADTEMA QVQMQASFGS WGAQASSFDF DGQLGSRNAG GLANSVGQDT  420
QFAISAVGSS FGVFNSMDES SRLMNPMNHD SAVGGTGIKI RARQPQVRPC TDGFAIQGTA  480
PRRLRLQKEF SAVPHGNRLE KDKNHNEDED EEEDEDEDEE EDEVQSAVAE ARDAGYNPDS  540
DKLLAESQLH NSDKGIEIAR ESSSNLRSRV KHTGKSGGGE IGSSAFLDSA PEDHGHSSSS  600
VYILGVVLVL ILFVLLLGIW KCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-45416415168NAC domain-containing protein 19
3swm_B4e-45416415168NAC domain-containing protein 19
3swm_C4e-45416415168NAC domain-containing protein 19
3swm_D4e-45416415168NAC domain-containing protein 19
3swp_A4e-45416415168NAC domain-containing protein 19
3swp_B4e-45416415168NAC domain-containing protein 19
3swp_C4e-45416415168NAC domain-containing protein 19
3swp_D4e-45416415168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G041100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6052260.0KR605226.1 Manihot esculenta NAC transcription factors 88 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633205.10.0protein NTM1-like 9
SwissprotF4JN351e-143NTL9_ARATH; Protein NTM1-like 9
TrEMBLA0A2C9UNR10.0A0A2C9UNR1_MANES; Uncharacterized protein
STRINGXP_002518952.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136251825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-136NAC transcription factor-like 9
Publications ? help Back to Top
  1. Zheng XY, et al.
    Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73
    [PMID:26139525]
  2. Guo T, et al.
    Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana.
    Mol Plant, 2017. 10(10): p. 1334-1348
    [PMID:28943325]