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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.13G028200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | YABBY | ||||||||
Protein Properties | Length: 218aa MW: 24476.6 Da PI: 6.5039 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 204.2 | 4.8e-63 | 6 | 171 | 2 | 169 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnve 87 ++f+ +eq+CyvqC+fCntil+vsvP +sl++vvtvrCGhCtsllsvn++k s q la+ sh ++++++ + ee ++ + Manes.13G028200.1.p 6 HLFDLPEQICYVQCGFCNTILLVSVPCSSLSMVVTVRCGHCTSLLSVNMMKVSfvpfQFLASLSH------DHQQKDVGPEEADTPKALD 89 68999********************************************9998556566666666......6667777777766655544 PP YABBY 88 kees.astsvsseklsenedeevprvppvirP.PekrqrvPsaynrfi.keeiqrikasnPdishreafsaaaknWahfPkihfg 169 ++s ++ s ++l+e +++ v r +++P Pekrqr+Psaynrfi +eei+r+ka+nP+++h+eafs+aaknWa fP++h++ Manes.13G028200.1.p 90 LQRSsSMMAYSDNELEE-DKNLVNR--VINKPaPEKRQRAPSAYNRFInREEIRRLKAENPSMAHKEAFSTAAKNWASFPPVHYK 171 44440444444444433.3333444..4567779**************669********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 6.1E-61 | 11 | 171 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.27E-5 | 117 | 167 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MATLSHLFDL PEQICYVQCG FCNTILLVSV PCSSLSMVVT VRCGHCTSLL SVNMMKVSFV 60 PFQFLASLSH DHQQKDVGPE EADTPKALDL QRSSSMMAYS DNELEEDKNL VNRVINKPAP 120 EKRQRAPSAY NRFINREEIR RLKAENPSMA HKEAFSTAAK NWASFPPVHY KEGGDGGDQE 180 EDKATWSCDA TEDNTEGNGF HERKVPRHSI WPRTPFK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.13G028200.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021633752.1 | 1e-165 | axial regulator YABBY 4 isoform X5 | ||||
Swissprot | Q9LDT3 | 9e-76 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A2C9UPN7 | 1e-164 | A0A2C9UPN7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_022861m | 1e-157 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6144 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 6e-76 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.13G028200.1.p |
Publications ? help Back to Top | |||
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