PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Trihelix

Protein Properties

Length: 391aa MW: 44825.1 Da PI: 6.7118

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.13G014800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	87.8	1.3e-27	81	162	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li++rrem+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++++ s +++y+++++ Manes.13G014800.1.p 81 WVQDETRSLIALRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS---GSAKMSYYKEID 162 ******************************************************************84...556899*997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-4	73	139	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.571	73	137	IPR017877	Myb-like domain
SMART	SM00717	5.2E-5	77	139	IPR001005	SANT/Myb domain
CDD	cd12203	1.36E-29	79	144	No hit	No description
Pfam	PF13837	6.3E-22	80	164	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MYLSEKPRPI NFYKEEVPPA TRDNMIIEVV SSNGDLPPHQ HHLHNPHQQQ PPQQQQQMIL 60 GESSGEDNHE VKAPKKRAET WVQDETRSLI ALRREMDGLF NTSKSNKHLW EQISAKMREK 120 GFDRSPTMCT DKWRNLLKEF KKAKHQDRGS GSAKMSYYKE IDEILRERSK NAQYKSPTPT 180 KVDSYMQFAD KGFDEASISF GPVEASGRSA LNLERRLDHD GHPLAITAAE AVAASGVPPW 240 NWRETPGNGA ESQSFVGRVI TVKYGDYTRR IGIDGTADAI KEAIKSAFRL RTKRAFWLED 300 EDQVIRSLDR DMPVGNYTLH LDEGLAVKVC LYDDSDHMPV HTEEKIFYTE DDYRDFLTRR 360 GWSCLREFDG YRNIDNMDDL RPGAIYRGVS *

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MYLSEKPRPI NFYKEEVPPA TRDNMIIEVV SSNGDLPPHQ HHLHNPHQQQ PPQQQQQMIL  60
GESSGEDNHE VKAPKKRAET WVQDETRSLI ALRREMDGLF NTSKSNKHLW EQISAKMREK  120
GFDRSPTMCT DKWRNLLKEF KKAKHQDRGS GSAKMSYYKE IDEILRERSK NAQYKSPTPT  180
KVDSYMQFAD KGFDEASISF GPVEASGRSA LNLERRLDHD GHPLAITAAE AVAASGVPPW  240
NWRETPGNGA ESQSFVGRVI TVKYGDYTRR IGIDGTADAI KEAIKSAFRL RTKRAFWLED  300
EDQVIRSLDR DMPVGNYTLH LDEGLAVKVC LYDDSDHMPV HTEEKIFYTE DDYRDFLTRR  360
GWSCLREFDG YRNIDNMDDL RPGAIYRGVS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	2e-51	75	160	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00004	PBM	Transfer from 920224	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.13G014800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021632785.1	0.0	trihelix transcription factor GT-1-like
Swissprot	Q9FX53	0.0	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A2C9UMY7	0.0	A0A2C9UMY7_MANES; Uncharacterized protein
STRING	cassava4.1_009336m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6817	32	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Manes.13G014800.1.p

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]