PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

MYB

Protein Properties

Length: 301aa MW: 33550 Da PI: 9.842

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.12G155900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.9	2.3e-18	17	62	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G+ +W+ Ia++++ gR++k+c++rw++ Manes.12G155900.1.p 17 RGHWRPAEDEKLRQLVNQYGPQNWNFIAEHLQ-GRSGKSCRLRWYNQ 62 899***************************.**********96 PP
2	Myb_DNA-binding	56.5	6.3e-18	69	113	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++T+eE+e+l++a++ G++ W++Iar ++ gRt++ +k++++ + Manes.12G155900.1.p 69 KKPFTEEEEERLLKAHQIQGNR-WASIARLFP-GRTDNAVKNHYHVV 113 689*****************.*****.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	26.119	12	67	IPR017930	Myb domain
SuperFamily	SSF46689	1.39E-29	15	110	IPR009057	Homeodomain-like
SMART	SM00717	3.3E-16	16	65	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-27	18	70	IPR009057	Homeodomain-like
CDD	cd00167	4.94E-15	20	61	No hit	No description
Pfam	PF13921	1.4E-18	20	80	No hit	No description
SMART	SM00717	1.7E-15	68	116	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	19.134	68	118	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.9E-21	71	116	IPR009057	Homeodomain-like
CDD	cd00167	1.13E-11	71	114	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MENGRGSSSD SGKSCHRGHW RPAEDEKLRQ LVNQYGPQNW NFIAEHLQGR SGKSCRLRWY 60 NQLDPNINKK PFTEEEEERL LKAHQIQGNR WASIARLFPG RTDNAVKNHY HVVMARRKRE 120 RLSSVYGKRS FHLHPTESNK KITTPGSNFE SYYRLHQPLD HHSKLGFQSN GYFTMCSSSS 180 PSWTISASTI TNESLNFDFL DGKGKGYMNS SSSSSHTKDG SHGFNGSMYG GYYQSLFGSS 240 AQISNSTKVA ANNNNPLANL LSYGGGNHAS KSATLQKELE DGAINQKDVS FIDFLGVGIS 300 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	9e-35	17	117	7	107	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269\|PubMed:19542355}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.12G155900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM034631	6e-75	KM034631.1 Jatropha curcas clone JcMYB010 MYB family protein gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021631408.1	0.0	transcription factor MYB117
Swissprot	Q9SEZ4	1e-58	MY105_ARATH; Transcription factor MYB105
TrEMBL	A0A2C9UWX2	0.0	A0A2C9UWX2_MANES; Uncharacterized protein
STRING	cassava4.1_025440m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF230	34	243

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33450.1	2e-73	myb domain protein 69

Link Out ? help Back to Top
Phytozome	Manes.12G155900.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]