PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.12G154500.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

NAC

Protein Properties

Length: 397aa MW: 43908 Da PI: 4.2183

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.12G154500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.8	2.5e-50	6	134	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtd elv++yLk+kv gkkl + ++i+evdiyk+ PwdLp k +k+++ +wyfF++r+kkya+g r nrat+ gyWk tg+ Manes.12G154500.1.p 6 LPPGFRFHPTDVELVKYYLKRKVMGKKLLI-DAIAEVDIYKFAPWDLPdKsYLKTGDLKWYFFCPREKKYASGARMNRATDLGYWKITGR 94 79***********************999.89**********96346777888**************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 d+++ +++ vg+ ktLvf++g+apkg +tdWvmhey+le Manes.12G154500.1.p 95 DRSINY-NDKIVGMIKTLVFHRGKAPKGDRTDWVMHEYKLE 134 *9.999**************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.24E-59	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	56.2	6	156	IPR003441	NAC domain
Pfam	PF02365	1.6E-26	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MGKKSLPPGF RFHPTDVELV KYYLKRKVMG KKLLIDAIAE VDIYKFAPWD LPDKSYLKTG 60 DLKWYFFCPR EKKYASGARM NRATDLGYWK ITGRDRSINY NDKIVGMIKT LVFHRGKAPK 120 GDRTDWVMHE YKLEDKGLDL RGVAQDAYVL CSIFKKDGRG PKNGAQYGAP FKEEDWDDDE 180 AEEEEEVNFV SSFIMSAPVP VNPNGSVVTN PHVPEGTCIG STALCPSEMP SASNIDTVVA 240 DNYVASKEPH QVGTENDDVA VLANFSEESP GSTALCPSEL PSISHIDAVD AYDDFASEEP 300 PQVGTENDDV VAMLAIFSEE SPFILTNDMN EQVHNINDGG NNVVNPSSDG IDIYDGLGDL 360 GNLNSFGDYI PPTRDQMLGG DEMQYLELMD LDEPLD*

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MGKKSLPPGF RFHPTDVELV KYYLKRKVMG KKLLIDAIAE VDIYKFAPWD LPDKSYLKTG  60
DLKWYFFCPR EKKYASGARM NRATDLGYWK ITGRDRSINY NDKIVGMIKT LVFHRGKAPK  120
GDRTDWVMHE YKLEDKGLDL RGVAQDAYVL CSIFKKDGRG PKNGAQYGAP FKEEDWDDDE  180
AEEEEEVNFV SSFIMSAPVP VNPNGSVVTN PHVPEGTCIG STALCPSEMP SASNIDTVVA  240
DNYVASKEPH QVGTENDDVA VLANFSEESP GSTALCPSEL PSISHIDAVD AYDDFASEEP  300
PQVGTENDDV VAMLAIFSEE SPFILTNDMN EQVHNINDGG NNVVNPSSDG IDIYDGLGDL  360
GNLNSFGDYI PPTRDQMLGG DEMQYLELMD LDEPLD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-46	5	162	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-46	5	162	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-46	5	162	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-46	5	162	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-46	5	162	19	174	NAC domain-containing protein 19
3swm_B	1e-46	5	162	19	174	NAC domain-containing protein 19
3swm_C	1e-46	5	162	19	174	NAC domain-containing protein 19
3swm_D	1e-46	5	162	19	174	NAC domain-containing protein 19
3swp_A	1e-46	5	162	19	174	NAC domain-containing protein 19
3swp_B	1e-46	5	162	19	174	NAC domain-containing protein 19
3swp_C	1e-46	5	162	19	174	NAC domain-containing protein 19
3swp_D	1e-46	5	162	19	174	NAC domain-containing protein 19
3ulx_A	1e-46	5	156	14	168	Stress-induced transcription factor NAC1
4dul_A	1e-46	5	162	16	171	NAC domain-containing protein 19
4dul_B	1e-46	5	162	16	171	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.12G154500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR605147	0.0	KR605147.1 Manihot esculenta NAC transcription factors 9 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021630391.1	0.0	NAC domain-containing protein 82-like isoform X1
TrEMBL	A0A0M4FP00	0.0	A0A0M4FP00_MANES; NAC transcription factors 9
STRING	cassava4.1_009151m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3302	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64060.1	9e-92	NAC domain containing protein 103

Link Out ? help Back to Top
Phytozome	Manes.12G154500.1.p

Publications ? help Back to Top
Hu W, et al. Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava. PLoS ONE, 2015. 10(8): p. e0136993 [PMID:26317631]