PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G146000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 350aa    MW: 38119.4 Da    PI: 6.2428
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G146000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.26.6e-21173222255
                  AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+W+AeIrd +     + +r++lg+f+tae Aa+a+++a+++++g
  Manes.12G146000.1.p 173 KYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDTAEAAARAYDEAALRFRG 222
                          8********.**********66.....56************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.9E-33172231IPR001471AP2/ERF domain
SMARTSM003807.8E-39173236IPR001471AP2/ERF domain
CDDcd000186.36E-24173232No hitNo description
PfamPF008472.0E-14173222IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23173231IPR016177DNA-binding domain
PROSITE profilePS5103225.725173230IPR001471AP2/ERF domain
PRINTSPR003678.4E-12174185IPR001471AP2/ERF domain
PRINTSPR003678.4E-12196212IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MCFVKVANSG EKDRENSEEE WVFHRNPLLM RPENQLQTVP AIPMLSGLCR EREMSAIVSA  60
LTHVVTGEVP DSADYFLTLS NESNSSSSSS AGAAGAAKRA REEEGCQDFA RLCRPFGDEF  120
SYGARLCRPV GDEFSYGESS KIATTTAIFP PASATFTTVY EHNEIFREEP RRKYRGVRQR  180
PWGKWAAEIR DPFKAARVWL GTFDTAEAAA RAYDEAALRF RGSKAKLNFP ENVKLQPSTS  240
NPMTTQLIIS DSPNTLLSVP TSTQPVVHSQ AVSGDIGCYQ RQAMSLHDQM VLSSSSTASH  300
HFHSSSPQSS FPLPFPAPPA GELTDPTSQG GGAHISIPAW SDYTPSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-23172233163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G146000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021629875.10.0ethylene-responsive transcription factor ABR1-like
TrEMBLA0A2C9UWT60.0A0A2C9UWT6_MANES; Uncharacterized protein
STRINGcassava4.1_010887m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49333254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.11e-21ERF family protein