PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.12G146000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 350aa MW: 38119.4 Da PI: 6.2428 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.2 | 6.6e-21 | 173 | 222 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrd + + +r++lg+f+tae Aa+a+++a+++++g Manes.12G146000.1.p 173 KYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDTAEAAARAYDEAALRFRG 222 8********.**********66.....56************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.9E-33 | 172 | 231 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.8E-39 | 173 | 236 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.36E-24 | 173 | 232 | No hit | No description |
Pfam | PF00847 | 2.0E-14 | 173 | 222 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-23 | 173 | 231 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 25.725 | 173 | 230 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.4E-12 | 174 | 185 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.4E-12 | 196 | 212 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MCFVKVANSG EKDRENSEEE WVFHRNPLLM RPENQLQTVP AIPMLSGLCR EREMSAIVSA 60 LTHVVTGEVP DSADYFLTLS NESNSSSSSS AGAAGAAKRA REEEGCQDFA RLCRPFGDEF 120 SYGARLCRPV GDEFSYGESS KIATTTAIFP PASATFTTVY EHNEIFREEP RRKYRGVRQR 180 PWGKWAAEIR DPFKAARVWL GTFDTAEAAA RAYDEAALRF RGSKAKLNFP ENVKLQPSTS 240 NPMTTQLIIS DSPNTLLSVP TSTQPVVHSQ AVSGDIGCYQ RQAMSLHDQM VLSSSSTASH 300 HFHSSSPQSS FPLPFPAPPA GELTDPTSQG GGAHISIPAW SDYTPSSSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-23 | 172 | 233 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.12G146000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021629875.1 | 0.0 | ethylene-responsive transcription factor ABR1-like | ||||
TrEMBL | A0A2C9UWT6 | 0.0 | A0A2C9UWT6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_010887m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4933 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61890.1 | 1e-21 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.12G146000.1.p |