PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.12G143500.2.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

WRKY

Protein Properties

Length: 214aa MW: 23688 Da PI: 6.6633

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.12G143500.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.3	2.1e-30	124	182	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDg++WrKYG+K+vk+s++pr+YY+C+s gC+vkk+ver++ed ++v++tYeg Hnhe Manes.12G143500.2.p 124 MDDGFKWRKYGKKSVKNSPNPRNYYKCSSGGCNVKKRVERDREDSSYVITTYEGIHNHE 182 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.4E-32	111	184	IPR003657	WRKY domain
SuperFamily	SSF118290	2.22E-27	117	184	IPR003657	WRKY domain
PROSITE profile	PS50811	31.192	119	184	IPR003657	WRKY domain
SMART	SM00774	2.3E-34	124	183	IPR003657	WRKY domain
Pfam	PF03106	1.1E-23	125	182	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MSTSYSSFLQ PPIMDYPSDP NPNNLPPHQN QYFHQNILDP FPAEFQLSDY LMLDADINGF 60 ADDSTTSEQS MISSEQVFSG GCAGGDGGAT SRNTSSKCKK GMKKDKSEVG NRVAFRTKSD 120 LEIMDDGFKW RKYGKKSVKN SPNPRNYYKC SSGGCNVKKR VERDREDSSY VITTYEGIHN 180 HESPCVVYYN QIPADGWSLQ PSSSPSQHSS SSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	6e-25	111	184	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.12G143500.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT827617	0.0	KT827617.1 Manihot esculenta WRKY transcription factor 42 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021629867.1	1e-159	probable WRKY transcription factor 51 isoform X2
Swissprot	Q93WU9	2e-51	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A2C9UWM5	1e-157	A0A2C9UWM5_MANES; Uncharacterized protein
STRING	cassava4.1_016594m	1e-125	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	6e-49	WRKY DNA-binding protein 51

Link Out ? help Back to Top
Phytozome	Manes.12G143500.2.p

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]