PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G129800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 309aa    MW: 34837.5 Da    PI: 4.5679
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G129800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.65.2e-1958111356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Manes.12G129800.1.p  58 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 111
                          566899***********************************************9 PP
2HD-ZIP_I/II1309.2e-4257149193
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++y+alk++ e+L++e+e+L +e
  Manes.12G129800.1.p  57 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYEALKANFESLQHENEALLKE 146
                          69**************************************************************************************99 PP

          HD-ZIP_I/II  91 lke 93 
                          ++e
  Manes.12G129800.1.p 147 IRE 149
                          986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.75E-1940115IPR009057Homeodomain-like
PROSITE profilePS5007117.44353113IPR001356Homeobox domain
SMARTSM003896.3E-1856117IPR001356Homeobox domain
CDDcd000862.67E-1658114No hitNo description
PfamPF000463.3E-1658111IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.0E-2060120IPR009057Homeodomain-like
PRINTSPR000318.5E-68493IPR000047Helix-turn-helix motif
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PRINTSPR000318.5E-693109IPR000047Helix-turn-helix motif
PfamPF021835.5E-19113154IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MKRLGSSDSL GALMSICPTT DEHSPRNGNH VYGREFQSML DSLDEEACVE ESGHVSEKKR  60
RLSVDQVKAL EKNFEVENKL EPERKVKLAQ ELGLQPRQVA VWFQNRRARW KTKQLERDYG  120
VLKANYEALK ANFESLQHEN EALLKEIREL KAKLNEENTE SNVSVKEEIL LAESDDKASE  180
EPALLASEIK DLNYESFNSK NNGVQGASLF PDFKDGSSDS DSSAILNEDN SPNPAISSSG  240
ILQNHQLMMS PPPPSSSSSS FQFTKANPYV TQFVKMEEHN FFSSEEACNF FSDEQAPTLQ  300
WYCPDQWN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105113RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G129800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021630243.10.0homeobox-leucine zipper protein ATHB-6-like
SwissprotQ940J11e-83ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLA0A2C9UVS00.0A0A2C9UVS0_MANES; Uncharacterized protein
STRINGcassava4.1_012419m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.12e-84homeobox protein 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]