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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.12G128300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ZF-HD | ||||||||
Protein Properties | Length: 249aa MW: 27257.3 Da PI: 7.4612 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.7 | 5e-32 | 51 | 106 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 k rY+eClkNhA+ +Gg+avDGCgEfm++ g+egt +alkCaAC+CHRnFHR+e+++ Manes.12G128300.1.p 51 KPRYRECLKNHAVGIGGQAVDGCGEFMAA-GAEGTLDALKCAACNCHRNFHRKETND 106 679*************************9.999*********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 7.2E-29 | 53 | 104 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-22 | 53 | 104 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 9.8E-29 | 53 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.628 | 54 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.03E-20 | 172 | 246 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-32 | 179 | 247 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.6E-25 | 185 | 241 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MEFEDQEEHE EEEQMGLPAS YDSLGNSSRV KMTSPAGEQA AAGAGPVQST KPRYRECLKN 60 HAVGIGGQAV DGCGEFMAAG AEGTLDALKC AACNCHRNFH RKETNDSTAP GGGELFFHGH 120 PHPHHLHHQV PQFAPYYRTP AGYLHVAPPQ QRPLALPSTS GGQSREDQED VSNPSGGGFG 180 GGSSRKRFRT KFTQEQKERM LALAERLGWR IQKHDEAAVQ EFCNETGVKR HVLKVWMHNN 240 KHTLGKKP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-28 | 186 | 243 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.12G128300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021629782.1 | 0.0 | zinc-finger homeodomain protein 1-like | ||||
Swissprot | Q6YXH5 | 2e-80 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A2C9UW22 | 0.0 | A0A2C9UW22_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_034411m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 7e-68 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Manes.12G128300.1.p |
Publications ? help Back to Top | |||
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