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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.12G127100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | bHLH | ||||||||
Protein Properties | Length: 215aa MW: 24451.5 Da PI: 10.1535 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.4 | 2.2e-12 | 53 | 100 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h+e+Er+RR riN+ +++Lr++lP++ K +Ka++L ++++ +k+L+ Manes.12G127100.1.p 53 QKHKEAERKRRIRINDQYANLRTVLPNL-----IKRNKASVLAETIQRVKELE 100 68*************************9.....69************999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.941 | 50 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.21E-8 | 53 | 104 | No hit | No description |
Pfam | PF00010 | 7.7E-10 | 53 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-12 | 54 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.79E-13 | 54 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-8 | 56 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 1.33E-5 | 137 | 205 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 3.5E-5 | 141 | 203 | No hit | No description |
CDD | cd04873 | 1.44E-7 | 141 | 205 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MHDMQPMSRL YDSGTCSKKY NFHSAANFMD VLSYKKLLAT SKSKEDTKVI SAQKHKEAER 60 KRRIRINDQY ANLRTVLPNL IKRNKASVLA ETIQRVKELE NTVSELKKIY GIGSLDCVFS 120 DGADMLRVEQ SKWQGEKLVK VMFSCEDKKK LMSEIARAVR SVKGKLVRAE IATMCGWAEC 180 VLWVQGLNGN QQMEILRTAL DAVIEPRMLN NKPH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 53 | 64 | KHKEAERKRRIR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.12G127100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021631314.1 | 1e-159 | transcription factor bHLH131 | ||||
TrEMBL | A0A2C9UVP0 | 1e-158 | A0A2C9UVP0_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_030122m | 1e-159 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12611 | 30 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38070.1 | 2e-39 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.12G127100.1.p |