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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.12G087500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 472aa MW: 52295.8 Da PI: 6.4454 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.4e-19 | 226 | 276 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++ + kl+ge Manes.12G087500.1.p 226 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDREAFKLRGE 276 59******9.**********955...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.20E-33 | 225 | 285 | No hit | No description |
SuperFamily | SSF54171 | 7.19E-23 | 226 | 284 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.9E-39 | 226 | 289 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.932 | 226 | 283 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-32 | 226 | 284 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.6E-12 | 227 | 276 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 227 | 238 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 249 | 265 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:2000070 | Biological Process | regulation of response to water deprivation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence Send to blast |
MAAAKDNSSK SKKVVDETQR MTRQDWELDR GEKEADINFL ERQQWKTIFG EASTAERPLR 60 KIHGPQRQDA IQFSASSAHH SIPSFSVSPS SASALSLHPP SSSTSSSSSR LLFPFAFEGF 120 NQPIQLPHQF RTNPSMPYFR PPHQSAQNQQ QMISFAQNQQ QGIACPPFFG GESAIAHQQQ 180 QQQMLQYWND SWSSSPRGRM MMMNRLGPDG RPLFRPPVQP INTTKLYRGV RQRHWGKWVA 240 EIRLPRNRTR LWLGTFDTAE DAALAYDREA FKLRGENARL NFPDLFLNKD KAMSTATTST 300 VLSSPTAHQS SSTKQTQEIL DWQASNVESM PPPPLPPPPP PPSKQPPGDN PDNDSGMESS 360 GATVNDEVQA VAEGSPVGEG VSGSQELGWG DMAEAWFNAI PAGWGPGSPV WDDLDTSNNL 420 LLQAHLPFGN PSHQQFSDSS DIQRQQDNMG SASSSSSSSF PLKSFYWKDQ D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-20 | 225 | 283 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.12G087500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021631268.1 | 0.0 | ethylene-responsive transcription factor ERF053 | ||||
TrEMBL | A0A2C9UVX3 | 0.0 | A0A2C9UVX3_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_006897m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4268 | 32 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20880.1 | 2e-58 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.12G087500.1.p |