PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G075600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 765aa    MW: 83374.3 Da    PI: 6.0068
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G075600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-2091146156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Manes.12G075600.1.p  91 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 146
                          688999***********************************************999 PP
2START225.31.9e-702805001206
                          HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
                START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                          ela +a++el+++a+ +ep+W++s       +n+de++++f+++ +     ++ ea+r+++vv+m++ +lve l+d++ qW++ +     
  Manes.12G075600.1.p 280 ELAVAAMEELIRMAQMGEPLWMSSLdgtnAVLNEDEYIRIFPRGIGpkpsgFKCEASRETAVVIMNHINLVEYLMDVN-QWSTVFSgivs 368
                          57899********************9998899***********999********************************.*********** PP

                          EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS
                START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160
                          +a+tlev+s+g      galq+m+ae+q+++plvp R+++fvRy++q+ +g+w++vdvS+d+ ++ p     +R++++pSg+li++++ng
  Manes.12G075600.1.p 369 RAMTLEVLSTGvagnynGALQVMTAEFQLPTPLVPtRESYFVRYCKQHAEGTWAVVDVSLDNLRPSPA----ARCRRRPSGCLIQEMPNG 454
                          *****************************************************************995....****************** PP

                          EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          +skvtwveh+++++r +h+l+++lv+sg+a+gak+wvatl+rqce+
  Manes.12G075600.1.p 455 YSKVTWVEHIEVDDRGVHNLYKQLVSSGHAFGAKRWVATLDRQCER 500
                          ********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-2269146IPR009057Homeodomain-like
SuperFamilySSF466891.04E-1977148IPR009057Homeodomain-like
PROSITE profilePS5007116.95788148IPR001356Homeobox domain
SMARTSM003894.8E-2089152IPR001356Homeobox domain
PfamPF000464.3E-1891146IPR001356Homeobox domain
CDDcd000862.72E-1991149No hitNo description
PROSITE patternPS000270123146IPR017970Homeobox, conserved site
PROSITE profilePS5084844.476271503IPR002913START domain
SuperFamilySSF559618.24E-36272502No hitNo description
CDDcd088755.67E-132275499No hitNo description
SMARTSM002345.8E-66280500IPR002913START domain
PfamPF018522.9E-59281500IPR002913START domain
Gene3DG3DSA:3.30.530.201.3E-4377468IPR023393START-like domain
SuperFamilySSF559615.17E-23519756No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 765 aa     Download sequence    Send to blast
MPAGVMIPAR NMPSMIGTNG SVGGFGSTSG LSLGQPNMMD SQLHHLDMTQ NTSESDLVRL  60
RDEEFDSTNT KSGSDNHEGA SGDDQDPRPK KKRYHRHTQH QIQEMEAFFK ECPHPDDKQR  120
KELSRELGLE PLQVKFWFQN KRTQMKTQHE RHENTQLRTE NEKLRADNMR YREALSNASC  180
PNCGGPTAIG EMSFDEHHLR LENTRLREEI DRISAIAAKY VGKPVVNYPL LSSPMAPRPL  240
ELGVGNFGAQ PGIGGDIYGA GDLLRSIGGH SDADKPMIIE LAVAAMEELI RMAQMGEPLW  300
MSSLDGTNAV LNEDEYIRIF PRGIGPKPSG FKCEASRETA VVIMNHINLV EYLMDVNQWS  360
TVFSGIVSRA MTLEVLSTGV AGNYNGALQV MTAEFQLPTP LVPTRESYFV RYCKQHAEGT  420
WAVVDVSLDN LRPSPAARCR RRPSGCLIQE MPNGYSKVTW VEHIEVDDRG VHNLYKQLVS  480
SGHAFGAKRW VATLDRQCER LASAMATNIP TGDVGVITNQ EGRKSMLKLA ERMVISFFAG  540
VSASTAHTWT TLSGTGADDV RVMTRKSVDD PGRPPGIVLS AATSFWLPVP PKRVFDFLRD  600
ENSRSEWDIL SNGGVVQEMA HIANGRDTGN CVSLLRVNVS DTQSANSSQS NMLILQESCT  660
DPTASFVIYA PVDIVAMNVV LNGGDPDYVA LLPSGFAILP DGTTTHGGGI GESGSGGSLL  720
TVAFQILVDS VPTAKLSLGS VATVNNLIAC TVERIKAALS CETA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G075600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021630849.10.0homeobox-leucine zipper protein HDG2-like isoform X1
RefseqXP_021630852.10.0homeobox-leucine zipper protein HDG2-like isoform X1
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A2C9UWF80.0A0A2C9UWF8_MANES; Uncharacterized protein
STRINGcassava4.1_002166m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2