PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.12G062100.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | WRKY | ||||||||
Protein Properties | Length: 491aa MW: 53363.9 Da PI: 5.8896 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.2 | 2.2e-30 | 108 | 165 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +Dgy+WrKYGqK vkg+ef rsYY+Ct+++C+vkk++ers+ d+++ +i+Y g+H+h+k Manes.12G062100.2.p 108 EDGYHWRKYGQKLVKGNEFVRSYYKCTHPSCQVKKQLERSQ-DGQIADIIYLGQHDHPK 165 7****************************************.***************85 PP | |||||||
2 | WRKY | 104.1 | 7.6e-33 | 276 | 334 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK vkg+++prsYYrC+s+gC+vkk+ver+++dpkvv++ Yeg+H+h+ Manes.12G062100.2.p 276 VNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCRVKKHVERASHDPKVVITSYEGQHDHD 334 58********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-26 | 99 | 166 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-24 | 101 | 166 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.389 | 102 | 166 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.2E-32 | 107 | 165 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.3E-23 | 108 | 164 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 8.4E-35 | 262 | 336 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-28 | 268 | 336 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 35.485 | 271 | 336 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.1E-37 | 276 | 335 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-25 | 277 | 333 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 491 aa Download sequence Send to blast |
MVSSREGTDE FASDELQKSQ GPDDGSNVIQ QIDDSGVCTS QNEEVTPVTP EKSLQDTNPG 60 AHISQVDKEE SISSTILHKV SHTPGISSSS LQSSGQEGRT IVREKVSEDG YHWRKYGQKL 120 VKGNEFVRSY YKCTHPSCQV KKQLERSQDG QIADIIYLGQ HDHPKPEHNL PLVTGFVLSV 180 AEERGDVPSS TGTEEDHVPH PLKATSSSQI SVGTTNEHVK NALSESDKIK DEVDSDDDPH 240 SKRQKKGNHN VEPTAVDKPT NEPRVVIQTL SEVHIVNDGY RWRKYGQKLV KGNPNPRSYY 300 RCSSPGCRVK KHVERASHDP KVVITSYEGQ HDHDIPPSRT VTHNATGPST YTTTIRSGES 360 GVKSGGSDMI VHNSSDPSGN SEEHLNTESR CRNDASGTDM VIHSGSGDDS KSNELMNDKP 420 VAPGGSDAAI IDVVVDASSV SGCRSNDQHD CDSRNESKVN CAAYSAHTIN PGSETNPNEQ 480 HRPNAEPVQS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-34 | 106 | 337 | 2 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.12G062100.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT827640 | 0.0 | KT827640.1 Manihot esculenta WRKY transcription factor 65 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021630676.1 | 0.0 | WRKY transcription factor 1 | ||||
Refseq | XP_021630677.1 | 0.0 | WRKY transcription factor 1 | ||||
TrEMBL | A0A251K3N9 | 0.0 | A0A251K3N9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_009560m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G04880.2 | 2e-86 | zinc-dependent activator protein-1 |
Link Out ? help Back to Top | |
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Phytozome | Manes.12G062100.2.p |