PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.12G059800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | FAR1 | ||||||||
Protein Properties | Length: 257aa MW: 29794.5 Da PI: 6.5971 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 76.4 | 5.7e-24 | 76 | 166 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY +Y++++GF vr++++++s+ n+ ++ ++fvCskeg+re++ +++ + + tr gC a+l++ +++ kw+vtk+ +eHnH+l Manes.12G059800.1.p 76 EFYIAYGRHIGFIVRIHHNRRSRVNNMVIGQDFVCSKEGFREKKYICrKDRVLPPPPITREGCPAMLRLALRDGVKWVVTKFIKEHNHPL 165 6*****************************************998762333444899********************************9 PP FAR1 90 a 90 + Manes.12G059800.1.p 166 M 166 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.4E-21 | 76 | 166 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MEGSSNQAFD SDDNGRCFHD YDRHEFADNE LSKNVGLCSD EVDSVIEQSN ENLLSTSDIV 60 EPYFGMEFNS RDDAREFYIA YGRHIGFIVR IHHNRRSRVN NMVIGQDFVC SKEGFREKKY 120 ICRKDRVLPP PPITREGCPA MLRLALRDGV KWVVTKFIKE HNHPLMSPDK VPWRGSAKNL 180 FSEDEKDRKI RELTSELNNE KQRCKRRCAA YQEQLQMVLS YIEEHTNHLS SKVQDVVNNV 240 KKLENELLDD SGCKYA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.12G059800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021629533.1 | 0.0 | putative protein FAR1-RELATED SEQUENCE 10 isoform X1 | ||||
Refseq | XP_021629534.1 | 0.0 | putative protein FAR1-RELATED SEQUENCE 10 isoform X1 | ||||
Refseq | XP_021629535.1 | 0.0 | putative protein FAR1-RELATED SEQUENCE 10 isoform X1 | ||||
Refseq | XP_021629536.1 | 0.0 | putative protein FAR1-RELATED SEQUENCE 10 isoform X1 | ||||
Refseq | XP_021629538.1 | 0.0 | putative protein FAR1-RELATED SEQUENCE 10 isoform X1 | ||||
Refseq | XP_021629539.1 | 0.0 | putative protein FAR1-RELATED SEQUENCE 10 isoform X1 | ||||
TrEMBL | A0A251JMN6 | 0.0 | A0A251JMN6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_025297m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8861 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 7e-44 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.12G059800.1.p |