PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G051000.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 464aa    MW: 50779 Da    PI: 8.6171
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G051000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.4e-08362409455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++ Lq
  Manes.12G051000.2.p 362 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQLLQ 409
                          8*************************9....677***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.95E-17356427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.18E-9356413No hitNo description
Gene3DG3DSA:4.10.280.105.1E-16358426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.326358408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-6362409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-9364414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MEGEFFLNAR IPPPPLQFEP ASTSAMPTWH SLSSAMELQE QSPDCFFTPN CVKSTDQCLH  60
FDSALSSMVS SPAASNSNIS GESFMIRELI GKLGSINNNN SGEISPHSRP MLPASYITPG  120
NNSTNTSCYS TPLNSPPKLD LPPLDQFSRE NLNFPSLGTP LGLNSSVAEF TADPGFAERA  180
AKFSCFGSRS FNGRSGQLGL NNAEFAYKCN PLMGNGKLPR VSSSPSLKII GSQKVNKSCS  240
PLQDRSELAN SSQESSVSEQ TQNGEAALKA TSELNSKKRK AVYKGKSKES NCGAKDAETD  300
DNSNTKRIKP NEGNGNEKSA VKAEEEQKDG DEKQAKNNNS KPPEPPKDYI HVRARRGQAT  360
DSHSLAERVR REKISERMKL LQDLVPGCNK VTGKALMLDE IINYVQLLQR QVEFLSMKLS  420
SVNTRLDFNM DTLISKDIRR RQPFLGSNTS KIHHYIAIFL MGQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G051000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021629412.10.0transcription factor bHLH62
TrEMBLA0A2C9UTX10.0A0A2C9UTX1_MANES; Uncharacterized protein
STRINGcassava4.1_004810m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.12e-93bHLH family protein