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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.12G051000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | bHLH | ||||||||
Protein Properties | Length: 557aa MW: 60935.2 Da PI: 7.0116 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.9 | 1.7e-08 | 362 | 409 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++ Lq Manes.12G051000.1.p 362 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQLLQ 409 8*************************9....677***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.31E-16 | 356 | 427 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.97E-10 | 356 | 413 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.7E-16 | 358 | 426 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.326 | 358 | 408 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-5 | 362 | 409 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.1E-9 | 364 | 414 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 557 aa Download sequence Send to blast |
MEGEFFLNAR IPPPPLQFEP ASTSAMPTWH SLSSAMELQE QSPDCFFTPN CVKSTDQCLH 60 FDSALSSMVS SPAASNSNIS GESFMIRELI GKLGSINNNN SGEISPHSRP MLPASYITPG 120 NNSTNTSCYS TPLNSPPKLD LPPLDQFSRE NLNFPSLGTP LGLNSSVAEF TADPGFAERA 180 AKFSCFGSRS FNGRSGQLGL NNAEFAYKCN PLMGNGKLPR VSSSPSLKII GSQKVNKSCS 240 PLQDRSELAN SSQESSVSEQ TQNGEAALKA TSELNSKKRK AVYKGKSKES NCGAKDAETD 300 DNSNTKRIKP NEGNGNEKSA VKAEEEQKDG DEKQAKNNNS KPPEPPKDYI HVRARRGQAT 360 DSHSLAERVR REKISERMKL LQDLVPGCNK VTGKALMLDE IINYVQLLQR QVEFLSMKLS 420 SVNTRLDFNM DTLISKDIFQ STNQLLHPMF PLDSSASAIF GQQHQQNPPL HSNISNGTVT 480 QCSTRPLDTG LCQSFNMQLP PLEGFNHNAP QYPIFCEGDL QTIVQMGFGQ NLNRESMLQA 540 HNFTGQNQVA QMKPEL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.12G051000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021629412.1 | 0.0 | transcription factor bHLH62 | ||||
TrEMBL | A0A2C9UTR7 | 0.0 | A0A2C9UTR7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_004810m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2530 | 34 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 1e-118 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.12G051000.1.p |