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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.12G047500.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 233aa MW: 26223.6 Da PI: 10.6284 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.8 | 4e-11 | 109 | 150 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k+ +W A I++ +k+++lg+ g+ eeAa ++++a+ Manes.12G047500.2.p 109 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAAHLYDRAAF 150 79**98..47*********4.....5********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.5E-4 | 108 | 165 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-5 | 108 | 151 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-7 | 109 | 153 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-6 | 111 | 155 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MVSLRRRKLL GICAGRNSFL TPLPRFFDNG TASLSATQNA RSVSVHPLPS DNVKQPEEKT 60 VSKVGAGSSN ASASSSSKEQ QSQPYPGQPV KRRKRHRRKH VQNQEPCLMR GVYFKNMKWQ 120 AAIKVDKKQI HLGTVGSQEE AAHLYDRAAF MCGREPNFEL SEEEKQELRK FKWDEFLAIT 180 RSAINSKKHK RRNGAMLQKR SEPALQNGDW DDKPRVNSLS ASEEMEPDSS TS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.12G047500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021630226.1 | 1e-174 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_021630227.1 | 1e-174 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
Swissprot | Q56XP9 | 1e-45 | ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040 | ||||
TrEMBL | A0A251JLN9 | 1e-172 | A0A251JLN9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_015296m | 1e-173 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.1 | 2e-46 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.12G047500.2.p |