PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.12G033500.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

NAC

Protein Properties

Length: 293aa MW: 33658.8 Da PI: 6.5636

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.12G033500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.4	1.7e-50	10	138	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrF P+deelv++yL kk++++++ ++ e+d++++ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat+sgyWkatgkd+ Manes.12G033500.1.p 10 LPPGFRFYPSDEELVCHYLYKKITNEEVLK-GTLVEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDR 98 79**********************9655.78***********88888999****************************** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 +vl+ ++e vg++ktLvfy++rap+g kt W+mhe+rle Manes.12G033500.1.p 99 AVLDPtTREIVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 138 977788*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.72E-61	8	156	IPR003441	NAC domain
PROSITE profile	PS51005	57.784	10	156	IPR003441	NAC domain
Pfam	PF02365	8.5E-28	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MGLRDIGATL PPGFRFYPSD EELVCHYLYK KITNEEVLKG TLVEIDLHTC EPWQLPEVAK 60 LNANEWYFFS FRDRKYATGF RTNRATTSGY WKATGKDRAV LDPTTREIVG MRKTLVFYRN 120 RAPNGIKTGW IMHEFRLETP HMPPKEDWVL CRVFHKSKGE NSSKFDEQFM FETTVPSNNL 180 SASPLTDHNH QGLPCGYHQQ ITSLSSSATP SHHHHHHQVN HDQNSLINLL QLSQETNTNI 240 FMNTTVDMSS KKDDEYGFLW EDMNLEENSL GNGGASSMEN MRFEMGNSMV FL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-47	9	156	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-47	9	156	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-47	9	156	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-47	9	156	16	165	NO APICAL MERISTEM PROTEIN
4dul_A	2e-47	9	156	16	165	NAC domain-containing protein 19
4dul_B	2e-47	9	156	16	165	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.12G033500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR605232	0.0	KR605232.1 Manihot esculenta NAC transcription factors 94 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021630142.1	0.0	protein CUP-SHAPED COTYLEDON 3-like
TrEMBL	A0A0M4G3S7	0.0	A0A0M4G3S7_MANES; NAC transcription factors 94
STRING	cassava4.1_033050m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4381	33	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	6e-94	NAC domain containing protein 74

Link Out ? help Back to Top
Phytozome	Manes.12G033500.1.p

Publications ? help Back to Top
Hu W, et al. Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava. PLoS ONE, 2015. 10(8): p. e0136993 [PMID:26317631]