PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G031700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 227aa    MW: 25615.7 Da    PI: 5.7667
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G031700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-1890140255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr ++ +g+++AeIrd + ng   r++lg+f++ae Aa a+++a+ +++g
  Manes.12G031700.1.p  90 SYRGVRKRP-WGKYAAEIRDSTRNG--IRVWLGTFDSAEAAALAYDQAAFSMRG 140
                          69*******.**********44465..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.74E-1989149No hitNo description
PROSITE profilePS5103222.77490148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-3090149IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-2290150IPR016177DNA-binding domain
PfamPF008478.1E-1390140IPR001471AP2/ERF domain
SMARTSM003803.7E-3790154IPR001471AP2/ERF domain
PRINTSPR003674.1E-1091102IPR001471AP2/ERF domain
PRINTSPR003674.1E-10114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MEEPSFFHQY LKPDLSFDYF PSLSWEESFP YHSNFLPFEA NDSGDMLLFD VVAQGHQKES  60
SESNSTTATK EEDLTSQEEV SVSTIKKEKS YRGVRKRPWG KYAAEIRDST RNGIRVWLGT  120
FDSAEAAALA YDQAAFSMRG SMAILNFPVE TVRQSLQDIK YRCEDGCSPV VALKRKHSMR  180
RKSTSKKSKG KELNIKPKNV VVLEDLGAEY LEELLSSSCE GSPNPW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-2889149161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A5e-28911501574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G031700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021631083.11e-169ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y94e-76ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A2C9UTA11e-168A0A2C9UTA1_MANES; Uncharacterized protein
STRINGcassava4.1_015566m1e-168(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.17e-48ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]