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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.12G026500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | YABBY | ||||||||
Protein Properties | Length: 216aa MW: 24192.3 Da PI: 6.3929 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 216.2 | 1.1e-66 | 6 | 169 | 2 | 169 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlks.nv 86 ++f+ +eq+CyvqC+fC+til+vsvP +sl++vvtvrCGhCt+llsvn++k s q la+ sh +++ ee+ ee + + Manes.12G026500.1.p 6 QLFDLPEQICYVQCGFCDTILLVSVPCSSLSMVVTVRCGHCTTLLSVNMMKVSfvpfQFLASLSH------DHQEEETSPEEVYAQRaLE 89 7899*********************************************9998555555666665......3344444443333333033 PP YABBY 87 ekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 ++++s++ s ++l++ ++ p +++PPekrqr+Psaynrfikeei+r+ka+nP+++h+eafs+aaknWa fP++h + Manes.12G026500.1.p 90 IQRSSSMVAFSDNELED---DKNPVNRAINKPPEKRQRAPSAYNRFIKEEIRRLKAENPSMAHKEAFSTAAKNWANFPPVHSK 169 33333344444434332...3333344799***************************************************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.3E-64 | 11 | 168 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 6.81E-9 | 113 | 165 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.9E-6 | 117 | 165 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MATLNQLFDL PEQICYVQCG FCDTILLVSV PCSSLSMVVT VRCGHCTTLL SVNMMKVSFV 60 PFQFLASLSH DHQEEETSPE EVYAQRALEI QRSSSMVAFS DNELEDDKNP VNRAINKPPE 120 KRQRAPSAYN RFIKEEIRRL KAENPSMAHK EAFSTAAKNW ANFPPVHSKE GGESGGQEEE 180 KATWSCEAIK VNTGGKGFHE RKVPRHSIWA NTPFE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.12G026500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021629374.1 | 1e-162 | axial regulator YABBY 4-like | ||||
Swissprot | Q9LDT3 | 7e-78 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A2C9UT63 | 1e-161 | A0A2C9UT63_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_033451m | 1e-149 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6144 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 4e-78 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.12G026500.1.p |
Publications ? help Back to Top | |||
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