PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Trihelix

Protein Properties

Length: 400aa MW: 45874.1 Da PI: 6.5189

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.12G016000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	86.6	3e-27	89	170	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rrem+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++++ s +++y+++++ Manes.12G016000.1.p 89 WVQDETRSLIGLRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS---GSAKMSYYKEID 170 ******************************************************************84...556899*997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.0E-4	79	150	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.455	81	145	IPR017877	Myb-like domain
SMART	SM00717	0.0022	85	147	IPR001005	SANT/Myb domain
CDD	cd12203	9.58E-29	87	152	No hit	No description
Pfam	PF13837	1.4E-21	88	172	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MYLSEKPRPI DFYKEEVLPT TRDNMIIEVV SSSGDLPPHQ HHLHNPHNPH PQQPPQQQQQ 60 QQQQQIILGE SSGEDTHEVK APKKRAETWV QDETRSLIGL RREMDGLFNT SKSNKHLWEQ 120 ISAKMREKGF DRSPTMCTDK WRNLLKEFKK AKHQDRGSGS AKMSYYKEID EILRDRSKNA 180 QYKSPTPTSK VDSYMQFADK GFDDTSISFG PVEASGRPTL NLERRLDHDG HPLAITAAEA 240 VAASAVPPWN WRETPGNGAE SQSFVGRVIT VKYGDYTRRI GIDGTADAIK EAIKSAFRLR 300 TKRAFWLEDE DEIIRSLDRD MPVGNYTLHL DEGLSVKVCL YDESDHIPVH TEEKTFYSED 360 DYRDFLTRRG WSCLREFDGY RNIDNMDDLR PGAIYRGAS*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MYLSEKPRPI DFYKEEVLPT TRDNMIIEVV SSSGDLPPHQ HHLHNPHNPH PQQPPQQQQQ  60
QQQQQIILGE SSGEDTHEVK APKKRAETWV QDETRSLIGL RREMDGLFNT SKSNKHLWEQ  120
ISAKMREKGF DRSPTMCTDK WRNLLKEFKK AKHQDRGSGS AKMSYYKEID EILRDRSKNA  180
QYKSPTPTSK VDSYMQFADK GFDDTSISFG PVEASGRPTL NLERRLDHDG HPLAITAAEA  240
VAASAVPPWN WRETPGNGAE SQSFVGRVIT VKYGDYTRRI GIDGTADAIK EAIKSAFRLR  300
TKRAFWLEDE DEIIRSLDRD MPVGNYTLHL DEGLSVKVCL YDESDHIPVH TEEKTFYSED  360
DYRDFLTRRG WSCLREFDGY RNIDNMDDLR PGAIYRGAS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	3e-51	83	168	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.12G016000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021631392.1	0.0	trihelix transcription factor GT-1-like isoform X1
Swissprot	Q9FX53	0.0	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A2C9UTT3	0.0	A0A2C9UTT3_MANES; Uncharacterized protein
STRING	cassava4.1_009069m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6817	32	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Manes.12G016000.1.p

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]