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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.11G162100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | NF-YB | ||||||||
Protein Properties | Length: 162aa MW: 17775.2 Da PI: 9.669 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 44.1 | 5.1e-14 | 15 | 105 | 7 | 92 |
NF-YB 7 flPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 +lP a v r++k l + i kda e + fi ++++ a+d c++ kr+tin++d+l al ++ f ++v p+k+ l ++ Manes.11G162100.1.p 15 ELPKAIVRRVVKDKLSHcstdgDLNIHKDALLAFSESARIFIHYLSATANDICKESKRQTINANDVLKALEEIEFTEFVGPIKASLDDFK 104 799999*****9998752221145799*********************************************************999987 PP NF-YB 92 e 92 Manes.11G162100.1.p 105 R 105 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.7E-31 | 12 | 145 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.7E-11 | 15 | 84 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 1.04E-24 | 16 | 128 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MESEKVEKVV PEVEELPKAI VRRVVKDKLS HCSTDGDLNI HKDALLAFSE SARIFIHYLS 60 ATANDICKES KRQTINANDV LKALEEIEFT EFVGPIKASL DDFKRKNVGK KAGASETGKK 120 AGASETGKKT GASETNEVKK KRKVEEPSKK SEGKSKQKKD D* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 138 | 143 | KKKRKV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.11G162100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021629009.1 | 1e-111 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A2C9V1W9 | 1e-110 | A0A2C9V1W9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_017996m | 1e-111 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11863 | 32 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 1e-43 | nuclear factor Y, subunit B11 |
Link Out ? help Back to Top | |
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Phytozome | Manes.11G162100.1.p |