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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.11G158600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 218aa MW: 23760.9 Da PI: 8.4968 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57 | 4.8e-18 | 37 | 89 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 + y+GVr++ ++Wv+e+r+p + k+ r++lg+f t+e+Aa+a++ a+++++ge Manes.11G158600.1.p 37 PVYRGVRRRN-GNKWVCEVREP---NmKSSRIWLGTFPTPEMAARAHDVAALAFRGE 89 68*****887.9******9998...8888*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.3E-13 | 37 | 89 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-23 | 38 | 102 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.4E-29 | 38 | 98 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.97 | 38 | 96 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.55E-21 | 38 | 97 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.3E-8 | 39 | 50 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.02E-25 | 39 | 98 | No hit | No description |
PRINTS | PR00367 | 5.3E-8 | 62 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MVSEIASSSS PSSTQKPVSV VKKRKAGRTK FKETRHPVYR GVRRRNGNKW VCEVREPNMK 60 SSRIWLGTFP TPEMAARAHD VAALAFRGEF AALNFIDSAS ILPRAKSSSA RDIKRAVLDF 120 VEAFNRPSVP SSSSSSSSSG CFNPCISTSD DFPGEKRQEN EANAAAATLF LDEEALFNMP 180 VLLDSLAEGL ILTPPSIGKE FDWDEIASAV DMTLWTI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-14 | 36 | 95 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.11G158600.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021629078.1 | 1e-157 | dehydration-responsive element-binding protein 1F-like | ||||
Swissprot | A2WZI4 | 2e-53 | DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F | ||||
Swissprot | Q8S9Z5 | 2e-53 | DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F | ||||
TrEMBL | A0A2C9V3B5 | 1e-156 | A0A2C9V3B5_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_033892m | 1e-157 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 1e-49 | C-repeat-binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Manes.11G158600.1.p |
Publications ? help Back to Top | |||
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