PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

ERF

Protein Properties

Length: 218aa MW: 23760.9 Da PI: 8.4968

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.11G158600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57	4.8e-18	37	89	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 + y+GVr++ ++Wv+e+r+p + k+ r++lg+f t+e+Aa+a++ a+++++ge Manes.11G158600.1.p 37 PVYRGVRRRN-GNKWVCEVREP---NmKSSRIWLGTFPTPEMAARAHDVAALAFRGE 89 68***887.9**9998...8888***********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	4.3E-13	37	89	IPR001471	AP2/ERF domain
SMART	SM00380	2.4E-23	38	102	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	9.4E-29	38	98	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.97	38	96	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.55E-21	38	97	IPR016177	DNA-binding domain
PRINTS	PR00367	5.3E-8	39	50	IPR001471	AP2/ERF domain
CDD	cd00018	7.02E-25	39	98	No hit	No description
PRINTS	PR00367	5.3E-8	62	78	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MVSEIASSSS PSSTQKPVSV VKKRKAGRTK FKETRHPVYR GVRRRNGNKW VCEVREPNMK 60 SSRIWLGTFP TPEMAARAHD VAALAFRGEF AALNFIDSAS ILPRAKSSSA RDIKRAVLDF 120 VEAFNRPSVP SSSSSSSSSG CFNPCISTSD DFPGEKRQEN EANAAAATLF LDEEALFNMP 180 VLLDSLAEGL ILTPPSIGKE FDWDEIASAV DMTLWTI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	6e-14	36	95	12	71	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269\|PubMed:17136305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.11G158600.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269\|PubMed:17136305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021629078.1	1e-157	dehydration-responsive element-binding protein 1F-like
Swissprot	A2WZI4	2e-53	DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
Swissprot	Q8S9Z5	2e-53	DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBL	A0A2C9V3B5	1e-156	A0A2C9V3B5_MANES; Uncharacterized protein
STRING	cassava4.1_033892m	1e-157	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF243	33	224

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51990.1	1e-49	C-repeat-binding factor 4

Link Out ? help Back to Top
Phytozome	Manes.11G158600.1.p

Publications ? help Back to Top
Wang Q, et al. Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice. Plant Mol. Biol., 2008. 67(6): p. 589-602 [PMID:18470484] Liu HH,Wang YG,Wang SP,Li HJ Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses. Genet. Mol. Res., 2015. 14(1): p. 2331-40 [PMID:25867379]