PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Manes.11G152400.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

C2H2

Protein Properties

Length: 293aa MW: 32159.6 Da PI: 6.2846

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.11G152400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00025	208	230	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Manes.11G152400.1.p 208 HECSICGSEFTSGQALGGHMRRH 230 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.56E-5	205	233	No hit	No description
Pfam	PF13912	2.4E-11	208	232	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.221	208	235	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	210	230	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MEFMEAQEEF MGSNDLSQIV KSKRTKRLRS SSAVTSSSSS GFGGSGGETG LVGEEHGSIS 60 SPTSCSEIYE STEEEEDMAN CLILLAQGDG PRKQQQQVSD ENNGRMEKEK FSARKFSDPS 120 ATTNYKPDFF VYECKTCGHR ASHKKPKSIV EEKKILLVSP LMDDLEDCQL NKSSSTFSSD 180 HLQPQPPPSL QTSNKGCGFL GNNKAKIHEC SICGSEFTSG QALGGHMRRH RANTANNVNS 240 NDQMKPRNIL SLDLNLPAPE EEHHHRESKF QFAATTQQAL VFSSPALVDC HY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.11G152400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021627582.1	0.0	zinc finger protein ZAT5-like
TrEMBL	A0A2C9V1J5	0.0	A0A2C9V1J5_MANES; Uncharacterized protein
STRING	cassava4.1_031269m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF586	34	141

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	2e-38	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Manes.11G152400.1.p