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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.11G148600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB_related | ||||||||
Protein Properties | Length: 576aa MW: 64809.3 Da PI: 6.8379 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.2 | 4.4e-09 | 464 | 512 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 rWT+ E +l+++v ++G g W+ I + + +Rt ++k++w+++l Manes.11G148600.2.p 464 RWTPSEVMKLIEGVSMYGVGKWTHIKKLLFsssSHRTSVNLKDKWRNLL 512 9**********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.445 | 457 | 516 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.72E-15 | 461 | 516 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.6E-11 | 461 | 514 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-12 | 463 | 513 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.9E-8 | 464 | 512 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.10E-19 | 465 | 513 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 576 aa Download sequence Send to blast |
MDTESKDALV DENASIFLHS HAEVDQDLSY LTTFEDEVTR LQHYLPECNM DCFDGTVGFE 60 TFNSLKGFNV DSFPCAFDYD HINFDSDALD LYLAQEAEET KGDSNTLPAT NKKVLGDFRI 120 DSACKGTFCA EPADEASNSS YGSCEKTCLG NVALKSQSSH FQKRECHSEI SSMYPSMEIA 180 LESASDRAPL LLDKMRTQDL RQVFSRIFGW ETSVMDKQWL KRRIVFGLQN RGELVDSLNL 240 LEFDKTSNAD EEKAVVLLNT ALSGSACNST DILDNQLNSR EKHVKRARLA GCNSLKSVSS 300 PLREVGFCSV SESNTAEALV TQKQTRRPTR ICTKGLQEQN SRYHHRKCGA SYKNARDDFL 360 NVKTHKHHCR RGTGTGQLNC QEESLKGTSS CTEVPLGLAV QIGESTKKSH LVNDFDNCKD 420 NEVSVSDEDF DRETSSAESQ DDVSEVDSVT RRKRGRKRKQ RHRRWTPSEV MKLIEGVSMY 480 GVGKWTHIKK LLFSSSSHRT SVNLKDKWRN LLKACNNEMQ KKRKGEQGET QLSHQLSESI 540 WCQVRELAVI YSYPKESKSK VSCNTVASST PSYYC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 452 | 459 | KRGRKRKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.11G148600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021628680.1 | 0.0 | uncharacterized protein LOC110626856 | ||||
Refseq | XP_021628681.1 | 0.0 | uncharacterized protein LOC110626856 | ||||
TrEMBL | A0A251KC44 | 0.0 | A0A251KC44_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_005458m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.2 | 4e-24 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Manes.11G148600.2.p |