PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G148600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 576aa    MW: 64809.3 Da    PI: 6.8379
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G148600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.4e-09464512348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                          rWT+ E  +l+++v ++G g W+ I + +     +Rt  ++k++w+++l
  Manes.11G148600.1.p 464 RWTPSEVMKLIEGVSMYGVGKWTHIKKLLFsssSHRTSVNLKDKWRNLL 512
                          9**********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.445457516IPR017930Myb domain
SuperFamilySSF466891.72E-15461516IPR009057Homeodomain-like
SMARTSM007175.6E-11461514IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-12463513IPR009057Homeodomain-like
PfamPF002498.9E-8464512IPR001005SANT/Myb domain
CDDcd116602.10E-19465513No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MDTESKDALV DENASIFLHS HAEVDQDLSY LTTFEDEVTR LQHYLPECNM DCFDGTVGFE  60
TFNSLKGFNV DSFPCAFDYD HINFDSDALD LYLAQEAEET KGDSNTLPAT NKKVLGDFRI  120
DSACKGTFCA EPADEASNSS YGSCEKTCLG NVALKSQSSH FQKRECHSEI SSMYPSMEIA  180
LESASDRAPL LLDKMRTQDL RQVFSRIFGW ETSVMDKQWL KRRIVFGLQN RGELVDSLNL  240
LEFDKTSNAD EEKAVVLLNT ALSGSACNST DILDNQLNSR EKHVKRARLA GCNSLKSVSS  300
PLREVGFCSV SESNTAEALV TQKQTRRPTR ICTKGLQEQN SRYHHRKCGA SYKNARDDFL  360
NVKTHKHHCR RGTGTGQLNC QEESLKGTSS CTEVPLGLAV QIGESTKKSH LVNDFDNCKD  420
NEVSVSDEDF DRETSSAESQ DDVSEVDSVT RRKRGRKRKQ RHRRWTPSEV MKLIEGVSMY  480
GVGKWTHIKK LLFSSSSHRT SVNLKDKWRN LLKACNNEMQ KKRKGEQGET QLSHQLSESI  540
WCQVRELAVI YSYPKESKSK VSCNTVASST PSYYC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1452459KRGRKRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G148600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021628680.10.0uncharacterized protein LOC110626856
RefseqXP_021628681.10.0uncharacterized protein LOC110626856
TrEMBLA0A251KC440.0A0A251KC44_MANES; Uncharacterized protein
STRINGcassava4.1_005458m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF150181313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.24e-24TRF-like 6