PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.11G142800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | NAC | ||||||||
Protein Properties | Length: 348aa MW: 40045 Da PI: 7.3824 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.4 | 9.6e-52 | 11 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhP+deel+v+yLk+kv++++l++ ++i+e+++y+++Pw+Lpkk+ +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+d+ Manes.11G142800.1.p 11 LPPGFRFHPSDEELIVHYLKNKVASRPLPA-SIIAEINLYQHNPWELPKKALFGEDEWYFFSPRDRKYPKGARPNRAAGSGYWKATGTDR 99 79****************************.89***************88888999********************************** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++l++ +++++g+kk Lvfy gr pkg+ktdW+m+eyrl Manes.11G142800.1.p 100 PILNSsGSKNIGVKKALVFYLGRPPKGTKTDWIMNEYRL 138 ***9878888***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.24E-62 | 5 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.693 | 11 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-26 | 12 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MESEACQNFN LPPGFRFHPS DEELIVHYLK NKVASRPLPA SIIAEINLYQ HNPWELPKKA 60 LFGEDEWYFF SPRDRKYPKG ARPNRAAGSG YWKATGTDRP ILNSSGSKNI GVKKALVFYL 120 GRPPKGTKTD WIMNEYRLLD AMVKPCRSKG SMRLDDWVLC RVRQKGNVSK NINEVQDDQN 180 KDDIWYLPKM EEARGTYTNY SNELITDCFN KDRRFLASIL AGQTLPPIDT ISCLSNQRSD 240 KDNSVVYEDG SDMLNSPITV SSFDNYSSLK MKPNEEARCE NLHPSNNKLN NGNRDEDLLP 300 RYMVPRSDLS YYHQNQSQER VYAPNTYDPI NGFLELDELA FYCKYLQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 8e-70 | 2 | 165 | 11 | 168 | NAC domain-containing protein 19 |
3swm_B | 8e-70 | 2 | 165 | 11 | 168 | NAC domain-containing protein 19 |
3swm_C | 8e-70 | 2 | 165 | 11 | 168 | NAC domain-containing protein 19 |
3swm_D | 8e-70 | 2 | 165 | 11 | 168 | NAC domain-containing protein 19 |
3swp_A | 8e-70 | 2 | 165 | 11 | 168 | NAC domain-containing protein 19 |
3swp_B | 8e-70 | 2 | 165 | 11 | 168 | NAC domain-containing protein 19 |
3swp_C | 8e-70 | 2 | 165 | 11 | 168 | NAC domain-containing protein 19 |
3swp_D | 8e-70 | 2 | 165 | 11 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.11G142800.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR605213 | 0.0 | KR605213.1 Manihot esculenta NAC transcription factors 75 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021627702.1 | 0.0 | NAC transcription factor 56-like | ||||
Swissprot | K4BNG7 | 1e-78 | NAP2_SOLLC; NAC domain-containing protein 2 | ||||
TrEMBL | A0A0M4FLR6 | 0.0 | A0A0M4FLR6_MANES; NAC transcription factors 75 | ||||
STRING | cassava4.1_029170m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2416 | 29 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 5e-81 | NAC-like, activated by AP3/PI |
Link Out ? help Back to Top | |
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Phytozome | Manes.11G142800.1.p |
Publications ? help Back to Top | |||
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