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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.11G127000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | Nin-like | ||||||||
Protein Properties | Length: 981aa MW: 107128 Da PI: 5.2418 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 90.6 | 1.2e-28 | 596 | 647 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl +l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Manes.11G127000.1.p 596 AEKNVSLGVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 647 589***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.768 | 586 | 667 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.6E-25 | 599 | 647 | IPR003035 | RWP-RK domain |
Gene3D | G3DSA:3.10.20.240 | 2.0E-24 | 877 | 959 | No hit | No description |
SuperFamily | SSF54277 | 1.85E-22 | 877 | 963 | No hit | No description |
SMART | SM00666 | 1.3E-23 | 880 | 962 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 20.963 | 880 | 962 | IPR000270 | PB1 domain |
Pfam | PF00564 | 1.0E-17 | 881 | 961 | IPR000270 | PB1 domain |
CDD | cd06407 | 1.36E-33 | 881 | 961 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 981 aa Download sequence Send to blast |
MENLFSLKEK GKGYWTSPRA QADGMAPSDG GAKNSISEDI FNSFSEFMNF DTYAGWCTSP 60 SATDQMFASY GSSSFQSTPY STFDALSFAE QSCLTSLVGG NALNAAGTSY SSGDKMAVQQ 120 VNVYASDLMD ADDLCAKERT GAQRQIEEMA NCMISRPVGF SLDEKMLRAL SLLRESADGG 180 ILAQVWVPMR RGDQYILTTF EQPYLLDQSL AGYREVSRTY TFSAEVTPDL PLGLPGRVFI 240 SRVPEWTSSV VYYSIAEYLR GQHARNHKVQ GSIALPIFEP PDNVCCAVLE LVTVKEKPNF 300 DSEMENVRLA LQAVNLRSTA PPQLLPQSLS RNQRAALAEI TDVLRAVCHA HSLPLALTWI 360 PCHYMEEAFD EVMKVRVREG NSRSSGKFVL CIERTACYVN DREMQGFVHA CSEHYIEEGQ 420 GIAGKALQSN HPFFFSDVKA YDITKYPLVH HARKYGLNAA VAIRLRSTYT GDDDYILEFF 480 LPVNMKGSSE QQLLLNNLSG TMQRICKSLR TVSDAELKGG EGSAVDFQKG AISSFPPLSV 540 SITSSQTTSS EAVLNLTDKV PLDASSSKYD AMKSDGPHEQ SFNASRRQPE KKRSTAEKNV 600 SLGVLQQYFS GSLKDAAKSI GVCPTTLKRI CRQHGISRWP SRKINKVNRS LKKIQTVLDS 660 VQGVEGGLKF DPTTGGFVAA GSIVQEFDSQ RIFLSPDKNL PARNSQSATE EAVSVPSVPC 720 IDGSNSAVKV EEDEFCMDTC GEVLMKSSIP VIDCSEDSKS IATDAEICQK GRLGCGPWAA 780 MDNASAFAKG TKGSLNSGSA KVDNSDTHFV SRSSCSLGAA EVLDTKEEGD DVMVEHNQPT 840 CSSMTESSNG SGSMIHGSAS SSPSFEEKHL KVKCDDGGSK ISVKATYRED TVRFKFEPSA 900 GCFQLYEEVA KRFKLQNGTF QLKYLDDEEE WVMLVTDSDL QECIEILDYV GKRSVKFLVR 960 DSVFTMGSSG SSNCFLGGSS * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.11G127000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021627569.1 | 0.0 | protein NLP9-like | ||||
Refseq | XP_021627570.1 | 0.0 | protein NLP9-like | ||||
Refseq | XP_021627571.1 | 0.0 | protein NLP9-like | ||||
Refseq | XP_021627572.1 | 0.0 | protein NLP9-like | ||||
Refseq | XP_021627573.1 | 0.0 | protein NLP9-like | ||||
Refseq | XP_021627574.1 | 0.0 | protein NLP9-like | ||||
Refseq | XP_021627576.1 | 0.0 | protein NLP9-like | ||||
Swissprot | O22864 | 0.0 | NLP8_ARATH; Protein NLP8 | ||||
TrEMBL | A0A251JVM8 | 0.0 | A0A251JVM8_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_000984m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3464 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43500.2 | 0.0 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.11G127000.1.p |
Publications ? help Back to Top | |||
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