PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.11G122000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | DBB | ||||||||
Protein Properties | Length: 240aa MW: 26295.8 Da PI: 4.5282 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.3 | 5.6e-07 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +e+ +++ C ++ lC++C e H H++ Manes.11G122000.1.p 4 QCDVCERAPATVICCADEAALCAKCDIEVHAAnklaskHQR 44 7*****************************65667777765 PP | |||||||
2 | zf-B_box | 29 | 2.2e-09 | 53 | 94 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + + C+ ++ek + +fC +++ l+C+dC + +H+ H Manes.11G122000.1.p 53 KLPPCDICQEKAAFIFCVEDRALFCQDCDEPIHSAgslsanH 94 6789*****************************656666666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.3 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.66E-6 | 3 | 47 | No hit | No description |
Pfam | PF00643 | 2.8E-5 | 4 | 44 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.5E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.859 | 52 | 99 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.2E-13 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 7.2E-8 | 53 | 95 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.11E-7 | 55 | 87 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MKIQCDVCER APATVICCAD EAALCAKCDI EVHAANKLAS KHQRLLLQCL SNKLPPCDIC 60 QEKAAFIFCV EDRALFCQDC DEPIHSAGSL SANHQRYLAT GIRVAVGSSC SKDTKKSCLE 120 PPNQSAPQTS VKLPVQQPSS FNSSWAVDDL MQFSDFESST DKQKEQLEFG EFQWLADVGL 180 FGEQLPQEAL TAAEVPQITA PSSVNVSSYR PTKSNMPNKK PRIEICDEDE EYFIVPDLG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:23624715}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.11G122000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021628898.1 | 1e-177 | B-box zinc finger protein 25-like isoform X1 | ||||
Swissprot | Q9SID1 | 1e-101 | BBX25_ARATH; B-box zinc finger protein 25 | ||||
TrEMBL | A0A2C9V0S4 | 1e-175 | A0A2C9V0S4_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_015068m | 1e-176 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3438 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31380.1 | 1e-103 | salt tolerance homologue |
Link Out ? help Back to Top | |
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Phytozome | Manes.11G122000.1.p |
Publications ? help Back to Top | |||
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