PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.11G103500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | YABBY | ||||||||
Protein Properties | Length: 191aa MW: 21197 Da PI: 8.4996 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 223.6 | 5.5e-69 | 3 | 157 | 3 | 170 |
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesa 92 ++ se+vCyv+CnfCntilav+vPs+ l+++vtvrCGhC++llsvn+ + q+ + ++ ++++ nl+s + ++++ Manes.11G103500.1.p 3 LDLVSERVCYVHCNFCNTILAVNVPSNNLLNIVTVRCGHCANLLSVNMGASLQTFPLQDP-------------QSQKVNLNSEDFNKDCG 79 66789********************************************99999998885.............34444455555555554 PP YABBY 93 stsvssekl.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s+s+ ++ e+ d+e pr+pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Manes.11G103500.1.p 80 SSSKCNKVTaFESGDQEPPRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 157 444444333246789999**999.9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.2E-73 | 7 | 157 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.75E-8 | 102 | 150 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.0E-5 | 105 | 151 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MSLDLVSERV CYVHCNFCNT ILAVNVPSNN LLNIVTVRCG HCANLLSVNM GASLQTFPLQ 60 DPQSQKVNLN SEDFNKDCGS SSKCNKVTAF ESGDQEPPRM PPIRPPEKRQ RVPSAYNRFI 120 KEEIQRIKAS NPDISHREAF STAAKNWAHF PHIHFGLKLD GNKHAKLDHQ SFAGEGSKKS 180 NGFYEINGTL * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.11G103500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021627464.1 | 1e-142 | putative axial regulator YABBY 2 | ||||
Refseq | XP_021627465.1 | 1e-142 | putative axial regulator YABBY 2 | ||||
Refseq | XP_021627466.1 | 1e-142 | putative axial regulator YABBY 2 | ||||
Swissprot | Q9XFB0 | 1e-82 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A2C9UZV8 | 1e-140 | A0A2C9UZV8_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_016957m | 1e-141 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 2e-75 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.11G103500.1.p |
Publications ? help Back to Top | |||
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