PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.11G084700.6.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

MYB_related

Protein Properties

Length: 1127aa MW: 123030 Da PI: 4.4479

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.11G084700.6.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.7	3.7e-10	982	1023	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++++ el++++++q+G++ + I + ++ gRt+ q+k+++ k Manes.11G084700.6.p 982 RWSKQDTELFYEGIRQFGTD-LSMIQQLFP-GRTRHQIKLKYKK 1023 9*****************.*****.*********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	1.7E-28	973	1057	No hit	No description
PROSITE profile	PS51293	9.846	978	1026	IPR017884	SANT domain
SMART	SM00717	1.4E-7	979	1027	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-5	980	1023	IPR009057	Homeodomain-like
CDD	cd00167	1.40E-6	982	1023	No hit	No description
SuperFamily	SSF46689	5.53E-10	982	1029	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1127 aa Download sequence Send to blast
MDSDLDSFDD ILLEPAVAHA RAAGKFQPRA KPRARKITST SLPSVLPSNT REKSDSSFPT 60 TLDTTKPVQS VNPLDDRLIS PVDSSLVLPS IVLGSEELLE NNKNNLKCEP LNSSTQTVGR 120 REDLASPDSL PSEFVVTDSS NNGYSNFLFI EAGSSRLDLD PVDVVVPDTT SSKDVTGNGS 180 KVPVSLSMTT LDVAGEPWKD NDRLSPHEKG SSVTSNLSPA RAENAGSVAA SLDGNGELNS 240 SLLKSVEDVD SLGFDLDQPD IMFPECHASD SRAGKKFQPK VRSHRRKEIS GSSMEQPATV 300 AAVNSHTTQP VESVLTMDKP VDPVCPSSPN LDNESNEPSK ENEVLLPHDN NLELVSPSSK 360 EFMPKGDMSS KEAYLAGLDS NFGQKPSGVA DSPIEVNSLG LDLDPFADIV LPPAISNARA 420 GGKFQPRGKA RPRKVTSESN SFAVSGATVE GPASVVSTVS DNLQSAKFID VGDGRLMDSV 480 YSTLTTMKSM ESKEALRNDD CTNSGVLLFK VDRSSGLENS SHLVASDALH IGDIDRDPHS 540 GLGKSIGENA DIFSGLEYIH DFVTQSPRTE IPLPASSDGT EEHSRFPAQI SVNSSAPGAC 600 NEATENVVTC NEAAVEIDNG KPQSDEPGSF PDFESPGILS ESAIALECCT RNTQPKSMVQ 660 NGKEIPSTSI LPDASPPNTQ IDPSESVYID VGSIPTFPSE DVLDYSSISF GNFIPADPTR 720 SEFPVNEERT NLAETSCSSD LNILHHEDVS TVPAKESSKD RKRKSSSASY LAQNESVKSA 780 RQLRKRTIAS QVVDGPEDEA QDSDGFPSEH RNSSIADGDI DYDYRVDEDN DNEDKVENTS 840 SSRRASKKSK KPMAEQEKKP VSRRKRKNDA PEQPNQQSRK KFSHSTRRKS RLKDLLSIPE 900 DEIDYQKMPF KDIILLAGYK EDLAIKEAKA SKNSTKKSST NSLHGEEEDD TVTSEQDGGV 960 ADDQSNSLFN CHSFMDKTPT ARWSKQDTEL FYEGIRQFGT DLSMIQQLFP GRTRHQIKLK 1020 YKKEERQHPL RLSEALSNRA KDHSYFEKVM EQLQQVAAQE ERESNRGNSV SLTDDEEAQL 1080 NPETNEEVAK SDEQDEDVTV DQDGDPLKYD EDDDDFDIWG SYKSEY*

Sequence ? help Back to Top

Protein Sequence Length: 1127 aa Download sequence Send to blast

MDSDLDSFDD ILLEPAVAHA RAAGKFQPRA KPRARKITST SLPSVLPSNT REKSDSSFPT  60
TLDTTKPVQS VNPLDDRLIS PVDSSLVLPS IVLGSEELLE NNKNNLKCEP LNSSTQTVGR  120
REDLASPDSL PSEFVVTDSS NNGYSNFLFI EAGSSRLDLD PVDVVVPDTT SSKDVTGNGS  180
KVPVSLSMTT LDVAGEPWKD NDRLSPHEKG SSVTSNLSPA RAENAGSVAA SLDGNGELNS  240
SLLKSVEDVD SLGFDLDQPD IMFPECHASD SRAGKKFQPK VRSHRRKEIS GSSMEQPATV  300
AAVNSHTTQP VESVLTMDKP VDPVCPSSPN LDNESNEPSK ENEVLLPHDN NLELVSPSSK  360
EFMPKGDMSS KEAYLAGLDS NFGQKPSGVA DSPIEVNSLG LDLDPFADIV LPPAISNARA  420
GGKFQPRGKA RPRKVTSESN SFAVSGATVE GPASVVSTVS DNLQSAKFID VGDGRLMDSV  480
YSTLTTMKSM ESKEALRNDD CTNSGVLLFK VDRSSGLENS SHLVASDALH IGDIDRDPHS  540
GLGKSIGENA DIFSGLEYIH DFVTQSPRTE IPLPASSDGT EEHSRFPAQI SVNSSAPGAC  600
NEATENVVTC NEAAVEIDNG KPQSDEPGSF PDFESPGILS ESAIALECCT RNTQPKSMVQ  660
NGKEIPSTSI LPDASPPNTQ IDPSESVYID VGSIPTFPSE DVLDYSSISF GNFIPADPTR  720
SEFPVNEERT NLAETSCSSD LNILHHEDVS TVPAKESSKD RKRKSSSASY LAQNESVKSA  780
RQLRKRTIAS QVVDGPEDEA QDSDGFPSEH RNSSIADGDI DYDYRVDEDN DNEDKVENTS  840
SSRRASKKSK KPMAEQEKKP VSRRKRKNDA PEQPNQQSRK KFSHSTRRKS RLKDLLSIPE  900
DEIDYQKMPF KDIILLAGYK EDLAIKEAKA SKNSTKKSST NSLHGEEEDD TVTSEQDGGV  960
ADDQSNSLFN CHSFMDKTPT ARWSKQDTEL FYEGIRQFGT DLSMIQQLFP GRTRHQIKLK  1020
YKKEERQHPL RLSEALSNRA KDHSYFEKVM EQLQQVAAQE ERESNRGNSV SLTDDEEAQL  1080
NPETNEEVAK SDEQDEDVTV DQDGDPLKYD EDDDDFDIWG SYKSEY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.11G084700.6.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021628026.1	0.0	uncharacterized protein LOC110626433
TrEMBL	A0A2C9UZP6	0.0	A0A2C9UZP6_MANES; Uncharacterized protein
STRING	cassava4.1_000789m	0.0	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	8e-39	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Manes.11G084700.6.p