PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G084700.3.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 1129aa    MW: 123289 Da    PI: 4.4479
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G084700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.73.7e-109841025346
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46  
                           rW++++ el++++++q+G++  + I + ++ gRt+ q+k+++ k
  Manes.11G084700.3.p  984 RWSKQDTELFYEGIRQFGTD-LSMIQQLFP-GRTRHQIKLKYKK 1025
                           9*******************.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.7E-289751059No hitNo description
PROSITE profilePS512939.8469801028IPR017884SANT domain
SMARTSM007171.4E-79811029IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-59821025IPR009057Homeodomain-like
SuperFamilySSF466895.53E-109841031IPR009057Homeodomain-like
CDDcd001671.40E-69841025No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1129 aa     Download sequence    Send to blast
MDSDLDSFDD ILLEPAVAHA ARAAGKFQPR AKPRARKITS TSLPSVLPSN TREKSDSSFP  60
TTLDTTKPVQ SVNPLDDRLI SPVDSSLVLP SIVLGSEELL ENNKNNLKCE PLNSSTQTVG  120
RREDLASPDS LPSEFVVTDS SNNGYSNFLF IEAGSSRLDL DPVDVVVPDT TSSKDVTGNG  180
SKVPVSLSMT TLDVAGEPWK DNDRLSPHEK GSSVTSNLSP ARAENAGSVA ASLDGNGELN  240
SSLLKSVEDV DSLGFDLDQP DIMFPECHAS DSRAGKKFQP KVRSHRRKEI SGSSMEQPAT  300
VAAVNSHTTQ PVESVLTMDK PVDPVCPSSP NLDNESNEPS KENEVLLPHD NNLELVSPSS  360
KEFMPKGDMS SKEAYLAGLD SNFGQKPSGV ADSPIEVNSL GLDLDPFADI VLPPAISNAR  420
AGGKFQPRGK ARPRKVTSES NSFAVSGATV EGPASVVSTV SDNLQSAKFI DVGDGRLMDS  480
VYSTLTTMKS MESKEALRND DCTNSGVLLF KVDRSSGLEN SSHLVASDAL HIGDIDRDPH  540
SGLGKSIGEN ADIFSGLEYI HDFVTQSPRT EIPLPASSDG TEEHSRFPAQ ISVNSSAPGA  600
CNEATENVVT CNEAAVEIDN GKPQSDFQEP GSFPDFESPG ILSESAIALE CCTRNTQPKS  660
MVQNGKEIPS TSILPDASPP NTQIDPSESV YIDVGSIPTF PSEDVLDYSS ISFGNFIPAD  720
PTRSEFPVNE ERTNLAETSC SSDLNILHHE DVSTVPAKES SKDRKRKSSS ASYLAQNESV  780
KSARQLRKRT IASQVVDGPE DEAQDSDGFP SEHRNSSIAD GDIDYDYRVD EDNDNEDKVE  840
NTSSSRRASK KSKKPMAEQE KKPVSRRKRK NDAPEQPNQQ SRKKFSHSTR RKSRLKDLLS  900
IPEDEIDYQK MPFKDIILLA GYKEDLAIKE AKASKNSTKK STNSLHGEEE DDTVTSEQDG  960
GVADDQSNSL FNCHSFMDKT PTARWSKQDT ELFYEGIRQF GTDLSMIQQL FPGRTRHQIK  1020
LKYKKEERQH PLRLSEALSN RAKDHSYFEK VMEQLQQVAA QEERESNRGN SVSLTDDEEA  1080
QLNPETNEEV AKSDEQDEDV TVDQDGDPLK YDEDDDDFDI WGSYKSEY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G084700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021628026.10.0uncharacterized protein LOC110626433
TrEMBLA0A2C9V0S60.0A0A2C9V0S6_MANES; Uncharacterized protein
STRINGcassava4.1_000789m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.17e-40MYB_related family protein