PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.11G084700.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB_related | ||||||||
Protein Properties | Length: 1129aa MW: 123305 Da PI: 4.4479 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.7 | 3.7e-10 | 984 | 1025 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++++ el++++++q+G++ + I + ++ gRt+ q+k+++ k Manes.11G084700.2.p 984 RWSKQDTELFYEGIRQFGTD-LSMIQQLFP-GRTRHQIKLKYKK 1025 9*******************.*********.***********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF15963 | 1.7E-28 | 975 | 1059 | No hit | No description |
PROSITE profile | PS51293 | 9.846 | 980 | 1028 | IPR017884 | SANT domain |
SMART | SM00717 | 1.4E-7 | 981 | 1029 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-5 | 982 | 1025 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.53E-10 | 984 | 1031 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.40E-6 | 984 | 1025 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1129 aa Download sequence Send to blast |
MDSDLDSFDD ILLEPAVAHA RAAGKFQPRA KPRARKITST SLPSVLPSNT REKSDSSFPT 60 TLDTTKPVQS VNPLDDRLIS PVDSSLVLPS IVLGSEELLE NNKNNLKCEP LNSSTQTVGR 120 REDLASPDSL PSEFVVTDSS NNGYSNFLFI EAGSSRLDLD PVDVVVPDTT SSKDVTGNGS 180 KVPVSLSMTT LDVAGEPWKD NDRLSPHEKG SSVTSNLSPA RAENAGSVAA SLDGNGELNS 240 SLLKSVEDVD SLGFDLDQPD IMFPECHASD SRAGKKFQPK VRSHRRKEIS GSSMEQPATV 300 AAVNSHTTQP VESVLTMDKP VDPVCPSSPN LDNESNEPSK ENEVLLPHDN NLELVSPSSK 360 EFMPKGDMSS KEAYLAGLDS NFGQKPSGVA DSPIEVNSLG LDLDPFADIV LPPAISNARA 420 GGKFQPRGKA RPRKVTSESN SFAVSGATVE GPASVVSTVS DNLQSAKFID VGDGRLMDSV 480 YSTLTTMKSM ESKEALRNDD CTNSGVLLFK VDRSSGLENS SHLVASDALH IGDIDRDPHS 540 GLGKSIGENA DIFSGLEYIH DFVTQSPRTE IPLPASSDGT EEHSRFPAQI SVNSSAPGAC 600 NEATENVVTC NEAAVEIDNG KPQSDFQEPG SFPDFESPGI LSESAIALEC CTRNTQPKSM 660 VQNGKEIPST SILPDASPPN TQIDPSESVY IDVGSIPTFP SEDVLDYSSI SFGNFIPADP 720 TRSEFPVNEE RTNLAETSCS SDLNILHHED VSTVPAKESS KDRKRKSSSA SYLAQNESVK 780 SARQLRKRTI ASQVVDGPED EAQDSDGFPS EHRNSSIADG DIDYDYRVDE DNDNEDKVEN 840 TSSSRRASKK SKKPMAEQEK KPVSRRKRKN DAPEQPNQQS RKKFSHSTRR KSRLKDLLSI 900 PEDEIDYQKM PFKDIILLAG YKEDLAIKEA KASKNSTKKS STNSLHGEEE DDTVTSEQDG 960 GVADDQSNSL FNCHSFMDKT PTARWSKQDT ELFYEGIRQF GTDLSMIQQL FPGRTRHQIK 1020 LKYKKEERQH PLRLSEALSN RAKDHSYFEK VMEQLQQVAA QEERESNRGN SVSLTDDEEA 1080 QLNPETNEEV AKSDEQDEDV TVDQDGDPLK YDEDDDDFDI WGSYKSEY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.11G084700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021628026.1 | 0.0 | uncharacterized protein LOC110626433 | ||||
TrEMBL | A0A2C9UZN6 | 0.0 | A0A2C9UZN6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_000789m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39160.1 | 9e-39 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.11G084700.2.p |