PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G083500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 625aa    MW: 69037.8 Da    PI: 5.7913
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G083500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS367.51.8e-1123136231320
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevs 88 
                          lv+lLl cAeav+++d  la+++L +l+  ++p gd+mqR+a++fteAL+arla + s+  ++ +p++ s++   s e+l++++++++++
  Manes.11G083500.1.p 313 LVHLLLVCAEAVAKEDYMLARKYLHHLNRVVTPLGDSMQRVASCFTEALSARLAATLSTKPSTSTPKPFSPYPpnSMEVLKIYQILYQAC 402
                          68*****************************************************66666555555555554444*************** PP

                 GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                          P++kf+h+taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvgs    s e ++etg+ L+++A++l+vpfef
  Manes.11G083500.1.p 403 PYVKFAHFTANQAIFEAFEVEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGS----SIEGVRETGRCLTELAHSLHVPFEF 488
                          *************************************************************....9************************ PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          ++ va++ledl++++++ + gEalaVn+v +lh ++    +l     ++L ++++  P++v++veqea+hn++ Fl rfleal+yysalf
  Manes.11G083500.1.p 489 HP-VAEALEDLKPHMFNRRVGEALAVNSVNRLHLVP--GNCLG----NLLTMIRDQAPNIVTIVEQEASHNGPYFLGRFLEALHYYSALF 571
                          **.7*******************************9..44444....5****************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle 320
                          dsl+a++p++s +r+kvE+ ++++ei+n+vaceg er++rhe+lekWr+ +e
  Manes.11G083500.1.p 572 DSLDATFPPDSAQRAKVEQYIFAPEIRNIVACEGIERTARHERLEKWRKIME 623
                          *************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.109287625IPR005202Transcription factor GRAS
PfamPF035146.2E-110313623IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MINSLCGSMG SIKSESSCNK IMQPTSPNGS SVSEFKKTPL SSDLELSSLT PPSLSFPAVK  60
FELDGDVEVQ SPDSSIWETF FSDHLDSDFM VLSPVRNLPS PQTSNCNYNY VNAMQVQSLS  120
GCSPPRHLSQ LGSFSSSHKG KGQSPLHRVF NSPNNQYMQI ETLSSLPAFE DFLDDYQRDG  180
LGGCQPSRFS SGSSSQLFDM PSTVPAVLDC LAATNPTRFG GSVSETSSAG SQLTQDRDVY  240
QMGSLRNAPL SQQLQQEQKE KQHEQPPPRS TTPPPPSTTP SAEQQQQQNL NHSLMVPLPI  300
GSDEQEQDSG LQLVHLLLVC AEAVAKEDYM LARKYLHHLN RVVTPLGDSM QRVASCFTEA  360
LSARLAATLS TKPSTSTPKP FSPYPPNSME VLKIYQILYQ ACPYVKFAHF TANQAIFEAF  420
EVEERVHVID LDILQGYQWP AFMQALAARP GGAPFLRITG VGSSIEGVRE TGRCLTELAH  480
SLHVPFEFHP VAEALEDLKP HMFNRRVGEA LAVNSVNRLH LVPGNCLGNL LTMIRDQAPN  540
IVTIVEQEAS HNGPYFLGRF LEALHYYSAL FDSLDATFPP DSAQRAKVEQ YIFAPEIRNI  600
VACEGIERTA RHERLEKWRK IMEGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-7732062326325Protein SCARECROW
5b3h_A2e-7732062325324Protein SCARECROW
5b3h_D2e-7732062325324Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G083500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4865941e-87AY486594.1 Hevea brasiliensis clone mHbCIRa403 microsatellite sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021626935.10.0DELLA protein GAI-like, partial
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A2C9UZI00.0A0A2C9UZI0_MANES; Uncharacterized protein (Fragment)
STRINGcassava4.1_032757m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-74RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]