PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G082100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family DBB
Protein Properties Length: 213aa    MW: 23556.5 Da    PI: 6.384
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G082100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.52.3e-07433534
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                          C+ +e+  ++lfC  ++  lC++C ++ H
  Manes.11G082100.1.p  4 LCDVCESAAAILFCAADEAALCRSCDEKVH 33
                         7**************************998 PP
2zf-B_box26.31.6e-085291237
             zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                         + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  Manes.11G082100.1.p 52 DVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtH 91
                         5799**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.1E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.153147IPR000315B-box-type zinc finger
CDDcd000212.35E-6333No hitNo description
PfamPF006434.8E-6334IPR000315B-box-type zinc finger
SMARTSM003361.5E-105196IPR000315B-box-type zinc finger
PROSITE profilePS501198.8735196IPR000315B-box-type zinc finger
PfamPF006432.5E-65285IPR000315B-box-type zinc finger
CDDcd000216.24E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MRTLCDVCES AAAILFCAAD EAALCRSCDE KVHLCNKLAS RHIRVGLADP SDVPRCDICE  60
NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HGRYLLLRQR VEFPGDKSGR LDELGQQPLD  120
QNEVRRDQNQ PPKLTMRDNK QNHRASPIPM MENNTDGDGK IDNKLIDLNA RPQRIHGQNS  180
SNQEQGIDVV SGTNHESASM VPAGSFKREP DK*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G082100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021626779.11e-157B-box zinc finger protein 19-like isoform X1
RefseqXP_021626780.11e-157B-box zinc finger protein 19-like isoform X1
RefseqXP_021626781.11e-157B-box zinc finger protein 19-like isoform X1
RefseqXP_021626782.11e-157B-box zinc finger protein 19-like isoform X1
SwissprotC0SVM57e-89BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A2C9UZ821e-156A0A2C9UZ82_MANES; Uncharacterized protein
STRINGcassava4.1_016111m1e-156(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.13e-91DBB family protein