PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G081200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 693aa    MW: 76538.6 Da    PI: 6.6369
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G081200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.38.7e-061101221426
                          --TTTTT-SS-SS CS
              zf-CCCH  14 tCkyGdrCkFaHg 26 
                           C yGd+C+F+H+
  Manes.11G081200.1.p 110 SCAYGDKCRFSHD 122
                          8***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.9E-498127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.48898124IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.413137162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.701.5E-71336579IPR013785Aldolase-type TIM barrel
SuperFamilySSF513951.53E-63340653No hitNo description
CDDcd028011.65E-90340575No hitNo description
PfamPF012071.2E-50343611IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360424442IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008033Biological ProcesstRNA processing
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MAESAAELAE NTTLVVDQPA SQPSNPNVTH RTPEELVAKA IAPVKREFLS PPPSRTNQND  60
TDVSDANAKA SQSSVVAKEK KSKRQLKRER RQKSALHLCP EVAKTEDVSS CAYGDKCRFS  120
HDIEALKAEK PADLEGKCPF STGDGPCPYG LACRFYGTHE DGVKGNSTNV LGKNSEINGL  180
NKDVQKLLWK NKMKFPKADA KLKSLGLMGP GNSKFKRQDD GEVDQKSAND SHVTNENGCG  240
DVASNLADKL ECSLEVPTEE NANGIITTDD IRPLKRVKSI TEEKQCSGEE ANGFSILEKD  300
LENSCPGAKL EITSDGALTE TDGSLKTHPR EKKLIDFRGK LYLAPLTTVG NLPFRRVCKV  360
LGADITCGEM AMCTNLLQGQ ASEWALLRRH SSEDLFGVQV CGAYPDTVAR TVELIDQECM  420
VDFIDINMGC PIDIVVNRGA GSSLLTKPMR MKSVINAASG TVDKPITVKV RTGYFEGKNR  480
IDSLIEDIGN WGANAVTIHG RSRQQRYSKL ADWDYIYQCA RKAPESLQVL GNGDIFSYTD  540
WNKRKSDCPE LSSCMIARGA LIKPWIFTEI KGQRHWDISS GERLDILKDY VRFGLEHWGS  600
DTKGVETTRH FLLEWLSYTC RYIPVGLLDI LPQQINWRPP SYYGRDDLET LMASDSAADW  660
IRISEILLGK VPDGFTFAPK HKSNAYDRAE NG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A1e-2833758427266tRNA-dihydrouridine synthase B
6ei9_B1e-2833758427266tRNA-dihydrouridine synthase B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G081200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM3992500.0KM399250.1 Manihot esculenta FMN-linked oxidoreductases superfamily protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021628563.10.0tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X1
SwissprotQ9T0J60.0DUS3L_ARATH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLA0A2C9UZK70.0A0A2C9UZK7_MANES; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGXP_002513011.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108891212
Publications ? help Back to Top
  1. Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R
    Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography.
    Proteomics, 2004. 4(2): p. 397-406
    [PMID:14760709]