PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G037800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 762aa    MW: 84394.5 Da    PI: 6.3014
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G037800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.94.6e-20107162156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          r+k +++t eq++e+e++F+++++p++++r++L+k+l L+ rqVk+WFqNrR++ k
  Manes.11G037800.1.p 107 RKKYHRHTIEQIREMEAFFKESPHPDEKQRQQLSKQLALSPRQVKFWFQNRRTQIK 162
                          79999***********************************************9877 PP
2START2321.7e-722775002206
                          HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
                START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                          + ++a++el+k+a+a+ep+W +s+    e++n+de++++f  ++       +s+ea+r++gvv+m+l++lv+++ d++ qW+e+++    
  Manes.11G037800.1.p 277 VVNQAMEELIKMATAGEPLWIRSVetgrEILNYDEYMKEFGVQNPssgrpkRSIEASRETGVVFMDLPRLVQSFNDVN-QWKEMFPclis 365
                          66789***********************************7766699*******************************.*********** PP

                          EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS
                START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160
                          ka+t++vis+g      ga+qlm+ae q+l+p+vp R+ +fvRy++ql+a++w+ivdvS+d+ +++  ++s+v+++++pSg+++e+ksng
  Manes.11G037800.1.p 366 KAATVDVISNGegfnknGAVQLMFAEVQMLTPVVPtREIYFVRYCKQLSAEKWAIVDVSIDNVEDNI-DASLVKCRKRPSGCIVEDKSNG 454
                          *****************************************************************98.9********************* PP

                          EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          h+kvtwveh +++++++h l+r +v+sgla+ga++w+atlq qce+
  Manes.11G037800.1.p 455 HCKVTWVEHLECQKSTVHTLYRTIVNSGLAFGARHWTATLQLQCER 500
                          ********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-2189162IPR009057Homeodomain-like
SuperFamilySSF466893.34E-2096165IPR009057Homeodomain-like
PROSITE profilePS5007117.912104164IPR001356Homeobox domain
SMARTSM003891.3E-17106168IPR001356Homeobox domain
PfamPF000461.9E-17107162IPR001356Homeobox domain
CDDcd000866.09E-17111162No hitNo description
PROSITE patternPS000270139162IPR017970Homeobox, conserved site
PROSITE profilePS5084839.648267503IPR002913START domain
SuperFamilySSF559612.2E-34269500No hitNo description
CDDcd088753.50E-112271499No hitNo description
SMARTSM002346.4E-73276500IPR002913START domain
PfamPF018529.3E-59277500IPR002913START domain
Gene3DG3DSA:3.30.530.202.4E-4325488IPR023393START-like domain
SuperFamilySSF559611.65E-14530747No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MAGVEMSTTP TSRTKDFFAS PTLSLSLAGI FRHANAAGAA EVLAMEVEEG EEGSGGGGRR  60
EGTVEISSEN SGPMRSRSED EFEGEGEHDD DDDAAGDGNN VKKKKKRKKY HRHTIEQIRE  120
MEAFFKESPH PDEKQRQQLS KQLALSPRQV KFWFQNRRTQ IKAIQERHEN SLLKTEMEKL  180
REENKAMRET INKACCPSCG MATTSSETDT SLTTEEHHLR IENAKLKAEV EKLRAALGKY  240
PPGGPSSCSA GSRQENRSSL DFYTGIFGLE KSRIMEVVNQ AMEELIKMAT AGEPLWIRSV  300
ETGREILNYD EYMKEFGVQN PSSGRPKRSI EASRETGVVF MDLPRLVQSF NDVNQWKEMF  360
PCLISKAATV DVISNGEGFN KNGAVQLMFA EVQMLTPVVP TREIYFVRYC KQLSAEKWAI  420
VDVSIDNVED NIDASLVKCR KRPSGCIVED KSNGHCKVTW VEHLECQKST VHTLYRTIVN  480
SGLAFGARHW TATLQLQCER IVFFMATNVP TKDSTGVATL AGRKSILKLA QRMTWSFCRA  540
IGASSYHSWN KVTSKTGDDI RVSSRKNLND PSEPIGVILC AVSSIWLPVS PSVLFDFLRD  600
ETHKTEWDIM SNGGLLQTIA NLAKGQDRGN AVTIQTMNSK DNPTWVIQDC CTNAYESTVV  660
YAPVDVNGMQ SVITGCDSSN VAVLPSGFSI LPDGLESRPL VISSRQEEKG TEGGSLLTMA  720
VQILTNTSPA AKLSMEYVES VNTLMSCTLR NIKTSLQCED S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102107KKKKRK
2102108KKKKRKK
3104108KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G037800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021627146.10.0homeobox-leucine zipper protein GLABRA 2-like isoform X2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A2C9V0670.0A0A2C9V067_MANES; Uncharacterized protein
STRINGcassava4.1_002187m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47143352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]