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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.11G035600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 174aa MW: 19228.3 Da PI: 4.9081 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.1 | 2.2e-18 | 49 | 98 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 + y+GVr ++ +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+ +++ Manes.11G035600.2.p 49 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFSTAEMAARAHDVAAMSIK 98 68*****998.**********843...6*********************98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.4E-12 | 49 | 98 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-27 | 50 | 101 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.257 | 50 | 107 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-18 | 50 | 98 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.5E-26 | 50 | 109 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-11 | 51 | 62 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.12E-24 | 51 | 94 | No hit | No description |
PRINTS | PR00367 | 4.4E-11 | 73 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MSEESTCSNS SSFPTAAAAT TTTDTSSSNS KAQDVVARKP KRARDSKHPV YRGVRMRSWG 60 KWVSEIREPR KKSRIWLGTF STAEMAARAH DVAAMSIKES SSSVSESEEL SEIVELPNIE 120 GSFDSAKPQT EFILFESVDG WVYPPEDMYG EFSDQWLGLE RLISSNFGAS VWN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-14 | 42 | 111 | 6 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.11G035600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002298236.1 | 2e-56 | ethylene-responsive transcription factor TINY | ||||
Swissprot | Q9LYD3 | 5e-33 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A251JS97 | 1e-122 | A0A251JS97_MANES; Uncharacterized protein | ||||
STRING | POPTR_0001s18800.1 | 9e-56 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 7e-30 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.11G035600.2.p |
Publications ? help Back to Top | |||
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