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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.11G035600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 237aa MW: 25593.4 Da PI: 4.8358 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.6 | 1.5e-18 | 49 | 99 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+ +++g Manes.11G035600.1.p 49 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFSTAEMAARAHDVAAMSIKG 99 68*****998.**********843...6**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.2E-12 | 49 | 99 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.4E-37 | 50 | 113 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-21 | 50 | 108 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-32 | 50 | 108 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.972 | 50 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.0E-11 | 51 | 62 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.08E-31 | 51 | 109 | No hit | No description |
PRINTS | PR00367 | 7.0E-11 | 73 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MSEESTCSNS SSFPTAAAAT TTTDTSSSNS KAQDVVARKP KRARDSKHPV YRGVRMRSWG 60 KWVSEIREPR KKSRIWLGTF STAEMAARAH DVAAMSIKGN TAILNFPELV DSLPRPVSLM 120 PRDIQAAAAK AASMVEFNSL TSSSPSPSSS SSSSSLSSVL SESSSSVSES EELSEIVELP 180 NIEGSFDSAK PQTEFILFES VDGWVYPPED MYGEFSDQWL GLERLISSNF GASVWN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-20 | 42 | 108 | 6 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.11G035600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021627715.1 | 1e-169 | dehydration-responsive element-binding protein 3-like | ||||
Swissprot | Q9LYD3 | 2e-67 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A2C9UZA8 | 1e-168 | A0A2C9UZA8_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_032457m | 1e-168 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 4e-55 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.11G035600.1.p |
Publications ? help Back to Top | |||
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