PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G035600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 237aa    MW: 25593.4 Da    PI: 4.8358
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G035600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-184999155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+ +++g
  Manes.11G035600.1.p 49 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFSTAEMAARAHDVAAMSIKG 99
                         68*****998.**********843...6**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-124999IPR001471AP2/ERF domain
SMARTSM003808.4E-3750113IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-2150108IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.6E-3250108IPR001471AP2/ERF domain
PROSITE profilePS5103222.97250107IPR001471AP2/ERF domain
PRINTSPR003677.0E-115162IPR001471AP2/ERF domain
CDDcd000188.08E-3151109No hitNo description
PRINTSPR003677.0E-117389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MSEESTCSNS SSFPTAAAAT TTTDTSSSNS KAQDVVARKP KRARDSKHPV YRGVRMRSWG  60
KWVSEIREPR KKSRIWLGTF STAEMAARAH DVAAMSIKGN TAILNFPELV DSLPRPVSLM  120
PRDIQAAAAK AASMVEFNSL TSSSPSPSSS SSSSSLSSVL SESSSSVSES EELSEIVELP  180
NIEGSFDSAK PQTEFILFES VDGWVYPPED MYGEFSDQWL GLERLISSNF GASVWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-2042108673Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G035600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021627715.11e-169dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD32e-67DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A2C9UZA81e-168A0A2C9UZA8_MANES; Uncharacterized protein
STRINGcassava4.1_032457m1e-168(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.14e-55ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]