PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.11G025600.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

C2H2

Protein Properties

Length: 547aa MW: 59449.2 Da PI: 8.593

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.11G025600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00033	91	111	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H Manes.11G025600.1.p 91 CEICHKGFQRDQNLQLHRRGH 111 *******************88 PP
2	zf-C2H2	12.6	0.00041	165	187	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Manes.11G025600.1.p 165 WKCDKCSKRYAVQSDWKAHSKTC 187 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.1E-4	88	111	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.0E-6	88	111	No hit	No description
SMART	SM00355	0.29	89	111	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.512	89	111	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	91	111	IPR007087	Zinc finger, C2H2
SMART	SM00355	120	130	160	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.4E-4	153	186	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.0E-6	160	185	No hit	No description
SMART	SM00355	140	165	185	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence Send to blast
MEMIKGLMFH QQQQPQEENM SNLTSASGEA SVSSGNRNEN YHPPQQYFAP PAAPQTQPVK 60 KKRNLPGNPD PDAEVIALSP KTLTATNRFL CEICHKGFQR DQNLQLHRRG HNLPWKLKQR 120 TSKEVRKKVY ICPESSCVHH DPSRALGDLT GIKKHFFRKH GEKKWKCDKC SKRYAVQSDW 180 KAHSKTCGTK EYRCDCGTLF SRRDSFITHR AFCDALAEES VRDITGAQNS VLHYSQPAPG 240 SSTTHNINLQ IPHFNTTTTQ DLLAFSLKKE QQSFSLRPEL PPWLACPPGP GAGAGAVPGP 300 SPPYHRQISV DHLSSSSASI FTHHQELCPN PNPSLEPTLP RYRTAPSPHM SATALLQKAT 360 QMGATMSGKT NCLMRPHHHQ EQAHVSSNSS NNSANTTGFG LNLSLHEELS GGWSFVDGLQ 420 ASFGNKAGVA VPSGNTTAGS SSAPSGALLQ EMMNSLSSSS GFEGNSSFED PFVSGVLNDK 480 KGRNFHDSIS KATTNENGGG TTGEGLTRDF LGLRAFSHSD ILSMAGLGNC VNSAHEQQNS 540 QSCSHS*

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence Send to blast

MEMIKGLMFH QQQQPQEENM SNLTSASGEA SVSSGNRNEN YHPPQQYFAP PAAPQTQPVK  60
KKRNLPGNPD PDAEVIALSP KTLTATNRFL CEICHKGFQR DQNLQLHRRG HNLPWKLKQR  120
TSKEVRKKVY ICPESSCVHH DPSRALGDLT GIKKHFFRKH GEKKWKCDKC SKRYAVQSDW  180
KAHSKTCGTK EYRCDCGTLF SRRDSFITHR AFCDALAEES VRDITGAQNS VLHYSQPAPG  240
SSTTHNINLQ IPHFNTTTTQ DLLAFSLKKE QQSFSLRPEL PPWLACPPGP GAGAGAVPGP  300
SPPYHRQISV DHLSSSSASI FTHHQELCPN PNPSLEPTLP RYRTAPSPHM SATALLQKAT  360
QMGATMSGKT NCLMRPHHHQ EQAHVSSNSS NNSANTTGFG LNLSLHEELS GGWSFVDGLQ  420
ASFGNKAGVA VPSGNTTAGS SSAPSGALLQ EMMNSLSSSS GFEGNSSFED PFVSGVLNDK  480
KGRNFHDSIS KATTNENGGG TTGEGLTRDF LGLRAFSHSD ILSMAGLGNC VNSAHEQQNS  540
QSCSHS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	8e-34	161	222	3	64	Zinc finger protein JACKDAW
5b3h_F	8e-34	161	222	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	127	KLKQRTSKEVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.11G025600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC212927	1e-133	AC212927.1 Populus trichocarpa clone POP017-N15, complete sequence.
GenBank	AC216467	1e-133	AC216467.1 Populus trichocarpa clone POP034-D10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021628740.1	0.0	protein indeterminate-domain 7-like
Refseq	XP_021628741.1	0.0	protein indeterminate-domain 7-like
Swissprot	Q9LRW7	1e-126	IDD11_ARATH; Protein indeterminate-domain 11
TrEMBL	A0A2C9UZS4	0.0	A0A2C9UZS4_MANES; Uncharacterized protein
STRING	cassava4.1_004973m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-116	indeterminate(ID)-domain 7

Link Out ? help Back to Top
Phytozome	Manes.11G025600.1.p

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]