PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G021500.3.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 608aa    MW: 66081 Da    PI: 7.661
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G021500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.7e-09490538348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                          +WT  E  +lv++v ++G g+W+ I r        Rt  ++k++w+++l
  Manes.11G021500.3.p 490 AWTLSEVMKLVEGVSRYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 538
                          7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.225483542IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.9E-13485541IPR009057Homeodomain-like
SuperFamilySSF466896.21E-16485546IPR009057Homeodomain-like
SMARTSM007172.9E-9487540IPR001005SANT/Myb domain
CDDcd116601.38E-19489539No hitNo description
PfamPF002497.1E-7490538IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
METEVEVEGN DEGKFEEPGF GKIYSSLSSA KQLTDPVVYK LVRVEGDGRL VPATDDEVME  60
VKDLLVDEKS EVCTVADVGQ PIGCISNDRS SPGMLPQLES SEGLSPSENT EVDPDKLNAR  120
LEETGPSFAP SLIQSHMHQS GGVGECSNAP VLTEGRALTS TTVTTSKPDF SKLNGEICLD  180
NLSIKELHET FKATFGRETT VKDKQWLKRR IAMGLTNSCD VSATTFIIKD NKLVNKGKED  240
GSDNGDGALA NDPATGTTMS GGQQGLPISH GSQLEDQVVS DKRNRNIGDN SGSEDHHTEQ  300
RAAKRVRKPT KRYIEELSEV ESKEASGKLR PIVKNSLLGQ MSSNFHTRSA RNVSLEGRTV  360
VTRLDSLGGS GIQIPCVSRV RRSRPRKNFM ALLKFNPSSM GVTAELVKKA LGAHSFLPDN  420
YENERAQSAP VQVQHRFLGV ADEDRQFLST GAVGGHHKVL KQVDSSGDSD DNVVTVPTSK  480
GGIRRKHHRA WTLSEVMKLV EGVSRYGAGR WSEIKRLAFA SYSYRTSVDL KDKWRNLLKA  540
SFAQIPSDKG INSRKNAATM PIPEPILLRV RELAETQSQV PPNLSSSKVP GTGSSGNSVH  600
EKQSGYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1380386RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G021500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021627955.10.0uncharacterized protein LOC110626403 isoform X4
TrEMBLA0A2C9UXK50.0A0A2C9UXK5_MANES; Uncharacterized protein
STRINGcassava4.1_004913m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-114TRF-like 6