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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.11G021500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB_related | ||||||||
Protein Properties | Length: 664aa MW: 72464.2 Da PI: 6.6358 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.3 | 8.6e-09 | 546 | 594 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v ++G g+W+ I r Rt ++k++w+++l Manes.11G021500.1.p 546 AWTLSEVMKLVEGVSRYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 594 7****************************99**99************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.225 | 539 | 598 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-12 | 541 | 597 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.95E-16 | 541 | 602 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-9 | 543 | 596 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.33E-19 | 545 | 595 | No hit | No description |
Pfam | PF00249 | 8.0E-7 | 546 | 594 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 664 aa Download sequence Send to blast |
METEVEVEGN DEGKFEEPGF GKIYSSLSSA KQLTDPVVYK LVRVEGDGRL VPATDDEVME 60 VKDLLVDEKS EVCTVADVGQ PIGCISNDRS SPGMLPQLES SEGLSPSENT EVDPDKLNAR 120 LEYIEEMLQK VKEEERLRIA CGSRDYSSAC VIVDSQCSDQ LDKLPAIDEN LQSEIPLQET 180 GPSFAPSLIQ SHMHQSGGVG ECSNAPVLTE GRALTSTTVT TSKPDFSKLN GEICLDNLSI 240 KELHETFKAT FGRETTVKDK QWLKRRIAMG LTNSCDVSAT TFIIKDNKLV NKGKEDGSDN 300 GDGALANDPA TGTTMSGGQQ GLPISHGSQL EDQVVSDKRN RNIGDNSGSE DHHTEQRAAK 360 RVRKPTKRYI EELSEVESKE ASGKLRPIVK NSLLGQMSSN FHTRSARNVS LEGRTVVTRL 420 DSLGGSGIQI PCVSRVRRSR PRKNFMALLK FNPSSMGVTA ELVKKALGAH SFLPDNYENE 480 RAQSAPVQVQ HRFLGVADED RQFLSTGAVG GHHKVLKQVD SSGDSDDNVV TVPTSKGGIR 540 RKHHRAWTLS EVMKLVEGVS RYGAGRWSEI KRLAFASYSY RTSVDLKDKW RNLLKASFAQ 600 IPSDKGINSR KNAATMPIPE PILLRVRELA ETQSQVPPNL SSSKVPGTGS SGNSVHEKQS 660 GYL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 436 | 442 | RRSRPRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.11G021500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021627952.1 | 0.0 | uncharacterized protein LOC110626403 isoform X1 | ||||
TrEMBL | A0A2C9UXS8 | 0.0 | A0A2C9UXS8_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_003191m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7849 | 30 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.2 | 1e-126 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Manes.11G021500.1.p |