PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G020200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRF
Protein Properties Length: 345aa    MW: 38540.8 Da    PI: 9.0774
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G020200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.94.9e-2577120144
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                          d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e
  Manes.11G020200.1.p  77 DPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHRGRNRSRKPVE 120
                          79***************************************986 PP
2QLQ62.51.1e-211146136
                  QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                         s+FT++Q+q+L++Q+l+yKy+++++P+PpeL+  ++
  Manes.11G020200.1.p 11 SPFTPTQWQELEHQALIYKYMVSGVPIPPELIYSVK 46
                         89*****************************87665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.3E-131147IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.9491247IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.1E-161245IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.24177121IPR014977WRC domain
PfamPF088791.6E-2178120IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MMNAPNTRNR SPFTPTQWQE LEHQALIYKY MVSGVPIPPE LIYSVKRSLE SSLASRLFPH  60
QPVGWGCFQV GFGRKADPEP GRCRRTDGKK WRCSKEAFPD SKYCERHMHR GRNRSRKPVE  120
LASTATSTTA TATVTNPLPS INRNLSTPTS PFASSYSFSP LSSTMEPEIP VYQNPSQSSI  180
LNPFLYSHSS SSSRPPGSGF SPQNSATHNL FLDAGSSSHA DKDYRYFHGM REVVDERAFF  240
PEASAGSARS SQDPYQQLAM SSYKGYSQLQ FQRLADTSKQ QEEDQQHCFV LGTDFKSSST  300
RPIKLEREGE TQKPLHHFFG EWPPKSTDSW LDLAPSSGLH TAGN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Acts together with GIF1 for the development of appropriate leaf size and shape through the promotion and/or maintenance of cell proliferation activity in leaf primordia. {ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:15960617}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G020200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2359135e-51AC235913.2 Glycine max clone GM_WBc0225O09, complete sequence.
GenBankAM4680355e-51AM468035.1 Vitis vinifera contig VV78X155042.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021628977.10.0growth-regulating factor 5-like
SwissprotQ8L8A64e-73GRF5_ARATH; Growth-regulating factor 5
TrEMBLA0A2C9UXK60.0A0A2C9UXK6_MANES; Uncharacterized protein
STRINGcassava4.1_025653m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97443137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-67growth-regulating factor 5