 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Manes.11G006200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
| Family |
Trihelix |
| Protein Properties |
Length: 354aa MW: 38998.2 Da PI: 10.1566 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Manes.11G006200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 50.9 | 4.1e-16 | 48 | 131 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W++ v L+ea+++++ +r+klk+++We+v++++ ++ +++spk qCk+k+e+++kry+ + +++ s++p++ +l+
Manes.11G006200.1.p 48 EWSEGAVSSLLEAYESKWVLRNRAKLKGHDWEDVARYVsSRANYTKSPKtqtQCKNKIESMKKRYRSESATADA------SSWPLYPRLD 131
5*************************************855666666543339***************999986......4699999986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 354 aa
Download sequence Send
to blast |
MDKETNQESP SLLSNNNSIK EEPSRKQLPA TGSSGFAAAG GDRLKRDEWS EGAVSSLLEA 60
YESKWVLRNR AKLKGHDWED VARYVSSRAN YTKSPKTQTQ CKNKIESMKK RYRSESATAD 120
ASSWPLYPRL DLLLRGSAAA TAAAAAAAVP PPQPPPQQQP SPLQVSNHSP PLMLLETSHL 180
LLPQPNPQPP APQPPAPPPP PPPPAIVTAQ NSHGSNGVDR GAKEDGVGTK LSDHVSDKNA 240
MDTDSSTPAL YSDKEKLRFK KMKMKMDKKK RRRKEEWEIA DSIRWLAEVV VRSEQARMET 300
MREVEKMRIE AEAKRGEMDL KRTEIIANTQ LEIAKLFAGV GKGVDSSLRI GRN*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 259 | 270 | KKMKMKMDKKKR |
| 2 | 267 | 272 | KKKRRR |
| 3 | 267 | 273 | KKKRRRK |
| 4 | 268 | 273 | KKRRRK |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G54390.1 | 3e-58 | sequence-specific DNA binding transcription factors |
