PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G001300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 296aa    MW: 31418.1 Da    PI: 7.4312
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G001300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding322.8e-101255445
                         S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                         WT e d+ + +a + ++ +   +W++Ia+ ++ g+tl+++k ++ 
  Manes.11G001300.1.p 12 WTREQDKAFENALATYPEDaldRWEKIAADVP-GKTLEEIKIHYE 55
                         ********************************.**********95 PP
2Myb_DNA-binding422.2e-13121165347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
  Manes.11G001300.1.p 121 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 165
                          6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.993762IPR017884SANT domain
SMARTSM007171.4E-7860IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-41058IPR009057Homeodomain-like
PfamPF002491.6E-71254IPR001005SANT/Myb domain
CDDcd001679.70E-91258No hitNo description
SuperFamilySSF466897.03E-111265IPR009057Homeodomain-like
PROSITE profilePS5129417.581113170IPR017930Myb domain
SuperFamilySSF466891.27E-16116171IPR009057Homeodomain-like
SMARTSM007173.2E-10118168IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.6E-17118168IPR006447Myb domain, plants
PfamPF002492.7E-11121165IPR001005SANT/Myb domain
CDDcd001678.38E-10121166No hitNo description
Gene3DG3DSA:1.10.10.601.4E-10121164IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MTVDEAGCSS LWTREQDKAF ENALATYPED ALDRWEKIAA DVPGKTLEEI KIHYELLIED  60
LNQIEAGSVP LPNYSSSEGS VSHVGDEGTS KKGGNLGHHN NESGHGNKAS RTDQERRKGI  120
AWTEDEHRLF LLGLDKYGKG DWRSISRNFV VTRTPTQVAS HAQKYFIRLN SMNKDRRRSS  180
IHDITSVGSG DISATQGPIT GQTNGSVAGG SAGKAVKQPS QHPTGPPGVG VYGPPTIGQP  240
VGGPLVSAVG TPVNLPGPAH MAYGLRAPIP GAMVPGAPMN MGPMTYPMPP TTAHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-1912821181RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G001300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021628270.10.0transcription factor SRM1-like
RefseqXP_021628272.10.0transcription factor SRM1-like
SwissprotQ9FNN61e-130SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A251JQT50.0A0A251JQT5_MANES; Uncharacterized protein
STRINGcassava4.1_012921m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46943358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-115MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]