PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G151200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 358aa    MW: 39307.7 Da    PI: 6.851
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G151200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox551.4e-17185239256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Manes.10G151200.1.p 185 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 239
                          778899***********************************************98 PP
2HD-ZIP_I/II128.13.6e-41185275192
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +
  Manes.10G151200.1.p 185 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELR-A 273
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 lk 92 
                          lk
  Manes.10G151200.1.p 274 LK 275
                          55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-17170235IPR009057Homeodomain-like
SuperFamilySSF466892.35E-18176242IPR009057Homeodomain-like
PROSITE profilePS5007117.216181241IPR001356Homeobox domain
SMARTSM003897.3E-16183245IPR001356Homeobox domain
CDDcd000864.02E-16185242No hitNo description
PfamPF000464.7E-15185239IPR001356Homeobox domain
PROSITE patternPS000270216239IPR017970Homeobox, conserved site
CDDcd146860.00572234273No hitNo description
PfamPF021835.4E-11241275IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.1E-24241284IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MELGLSLGDA SKPFGYMDKS RDITRTTSSS LGFCMALSIG PNPTNQQELE QQHSNDTSTD  60
SEPTTKINTP TTFSPVDPPL IQLDLLPNTP VPRSNHHALP WPSSDYGSCE AASSGNMTRS  120
GFDVNRLPAV EEAEDGAALS SSPPNSAASS FQMDFCIYSK TGNQEAEVDR ASSRASDEDD  180
NGSTRKKLRL SKEQSAFLEE SFKEHNTLNP KQKLALAKQL NLRPRQVEVW FQNRRARTKL  240
KQTEVDCEYL KRCCETLTEE NRRLHKELQE LRALKTSNPF HMTLPATTLT MCPSCERVAT  300
TTSTTTATPT TTVTPTTPMN NNNSSSIEAT SKATATGLTL ARPGRYYPFS HNKPTSC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183189TRKKLRL
2233241RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G151200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1473521e-128EF147352.1 Populus trichocarpa clone WS0122_O02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021625394.10.0homeobox-leucine zipper protein HOX11-like
SwissprotP466652e-92HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A2C9V6E30.0A0A2C9V6E3_MANES; Uncharacterized protein
STRINGcassava4.1_009563m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23353382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.18e-66homeobox from Arabidopsis thaliana