PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.10G146400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | bHLH | ||||||||
Protein Properties | Length: 422aa MW: 46684.4 Da PI: 6.1406 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.6 | 6.3e-10 | 349 | 394 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l P+ +k + a+ L AveYIk+Lq Manes.10G146400.1.p 349 SIAERVRRMRISERMRKLQDLFPNM----DKQTNTADKLDFAVEYIKDLQ 394 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.186 | 343 | 393 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-13 | 346 | 405 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.28E-9 | 347 | 398 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.0E-12 | 348 | 407 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-6 | 349 | 394 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.0E-7 | 349 | 399 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MSLMYSPSFN YQDGELRRNQ ESMDLNFHHY HQAEHQHSSG LLRYRSAPSS FLESLVSGAT 60 GHGNDSGGIE GEDSLYFQAS SPDMDTVLAR FMSTCNGSGD SNSENLQEYE KRPAMKQEME 120 DSQIVYQSSP INNLASNGNS VDVSNSLDSS FGVMNSMALE NSMQASKMST VNGSNLVRQN 180 SSPAGFFSNL GVDNGFTVTK DAGGVRACNG LNGEANPSTS SLNNHLSFPS GQRLLPQIAE 240 FEDENPGASS PEENTRKRQY MNFADNTWDD PSLNDFKRLR SNDGNVFSGL YMLDNQNENS 300 GTRVSGLTHH LSLPKTAAEM ANVEKFLQFQ DSVPCKIRAK RGCATHPRSI AERVRRMRIS 360 ERMRKLQDLF PNMDKQTNTA DKLDFAVEYI KDLQKQLKTL KDTKAKCMCS SEQKQHSSSS 420 S* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.10G146400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021624635.1 | 0.0 | transcription factor bHLH130-like | ||||
TrEMBL | A0A2C9V697 | 0.0 | A0A2C9V697_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_007893m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4005 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 1e-55 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.10G146400.1.p |