PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Manes.10G146400.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

bHLH

Protein Properties

Length: 422aa MW: 46684.4 Da PI: 6.1406

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.10G146400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.6	6.3e-10	349	394	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l P+ +k + a+ L AveYIk+Lq Manes.10G146400.1.p 349 SIAERVRRMRISERMRKLQDLFPNM----DKQTNTADKLDFAVEYIKDLQ 394 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.186	343	393	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-13	346	405	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.28E-9	347	398	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.0E-12	348	407	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-6	349	394	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.0E-7	349	399	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MSLMYSPSFN YQDGELRRNQ ESMDLNFHHY HQAEHQHSSG LLRYRSAPSS FLESLVSGAT 60 GHGNDSGGIE GEDSLYFQAS SPDMDTVLAR FMSTCNGSGD SNSENLQEYE KRPAMKQEME 120 DSQIVYQSSP INNLASNGNS VDVSNSLDSS FGVMNSMALE NSMQASKMST VNGSNLVRQN 180 SSPAGFFSNL GVDNGFTVTK DAGGVRACNG LNGEANPSTS SLNNHLSFPS GQRLLPQIAE 240 FEDENPGASS PEENTRKRQY MNFADNTWDD PSLNDFKRLR SNDGNVFSGL YMLDNQNENS 300 GTRVSGLTHH LSLPKTAAEM ANVEKFLQFQ DSVPCKIRAK RGCATHPRSI AERVRRMRIS 360 ERMRKLQDLF PNMDKQTNTA DKLDFAVEYI KDLQKQLKTL KDTKAKCMCS SEQKQHSSSS 420 S*

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MSLMYSPSFN YQDGELRRNQ ESMDLNFHHY HQAEHQHSSG LLRYRSAPSS FLESLVSGAT  60
GHGNDSGGIE GEDSLYFQAS SPDMDTVLAR FMSTCNGSGD SNSENLQEYE KRPAMKQEME  120
DSQIVYQSSP INNLASNGNS VDVSNSLDSS FGVMNSMALE NSMQASKMST VNGSNLVRQN  180
SSPAGFFSNL GVDNGFTVTK DAGGVRACNG LNGEANPSTS SLNNHLSFPS GQRLLPQIAE  240
FEDENPGASS PEENTRKRQY MNFADNTWDD PSLNDFKRLR SNDGNVFSGL YMLDNQNENS  300
GTRVSGLTHH LSLPKTAAEM ANVEKFLQFQ DSVPCKIRAK RGCATHPRSI AERVRRMRIS  360
ERMRKLQDLF PNMDKQTNTA DKLDFAVEYI KDLQKQLKTL KDTKAKCMCS SEQKQHSSSS  420
S*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.10G146400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021624635.1	0.0	transcription factor bHLH130-like
TrEMBL	A0A2C9V697	0.0	A0A2C9V697_MANES; Uncharacterized protein
STRING	cassava4.1_007893m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4005	33	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-55	bHLH family protein

Link Out ? help Back to Top
Phytozome	Manes.10G146400.1.p