 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Manes.10G143200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
| Family |
MYB |
| Protein Properties |
Length: 349aa MW: 39380 Da PI: 5.5581 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Manes.10G143200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 50.7 | 4.1e-16 | 23 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g W++eEde+l+++ G g+W+ Iar g+ R++k+c++rw +yl
Manes.10G143200.1.p 23 KGLWSPEEDEKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYL 70
678*******************************************97 PP
|
| 2 | Myb_DNA-binding | 50 | 6.6e-16 | 76 | 120 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg+++ +E+el++ ++ lG++ W+ Ia++++ gRt++++k++w++
Manes.10G143200.1.p 76 RGAFSSQEEELIISLHSILGNR-WSQIAARLP-GRTDNEIKNFWNST 120
89********************.*********.***********986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 349 aa
Download sequence Send
to blast |
MRKPDLMGKD KGVMNNNKAK LRKGLWSPEE DEKLIKYMLT NGQGCWSDIA RNAGLQRCGK 60
SCRLRWINYL RPDLKRGAFS SQEEELIISL HSILGNRWSQ IAARLPGRTD NEIKNFWNST 120
LKKRLKINNN NPSTSSPNND SDSSEPRDHV IGNIMPMHKD DLDLITMCMD SSSSSSASIQ 180
PMVGAGGGNQ FDPFFILNNN QLDFTGAAAL FDMSTCLNQV GMGDGFYGDC GILESHHNEI 240
GIERDLCVPP LEICSRSIDE EEEKKTNNNA VTNHSIINNN NIINNHLNNN NSCFNNTDHH 300
LHHQNFKVED MFGFENHWQG DNLRMGEWDL EGLMDNISSF PFLDFQVQ*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1 and its close homologs, including NAC043/NST1, NAC066/NST2, NAC101/VND6 and NAC030/VND7. Is required for functional expression of a number of secondary wall-associated transcription factors and secondary wall biosynthetic genes involved in cellulose, xylan and lignin synthesis. Functions redundantly with MYB46 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). {ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883}. |
