PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Manes.10G123900.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Protein Properties

Length: 123aa MW: 13910 Da PI: 6.2529

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.10G123900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	31.4	3.3e-10	10	90	3	83
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 +++++ +sg l+++ + +++ ++ +++ + + de gr+W + +++ + + g +l+ GW +Fv+ ++L++gD v ++ Manes.10G123900.1.p 10 SKMLTRTDIESG-LCISTSSLSQLPFDEGQQVNMHVHDEGGREWIFPCTIkeDENVG-RFLSVGWLDFVRFKDLRAGDQVNIH 90 556677777777.99****9998888999*************874444444.57999*************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.29E-9	4	88	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.5E-11	5	92	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.15E-9	8	87	No hit	No description
Pfam	PF02362	2.1E-7	10	90	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 123 aa Download sequence Send to blast
MATTKLVLFS KMLTRTDIES GLCISTSSLS QLPFDEGQQV NMHVHDEGGR EWIFPCTIKE 60 DENVGRFLSV GWLDFVRFKD LRAGDQVNIH EEVTKSEVPA TLMKIRVQRK IRLFGVDIWA 120 AV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.10G123900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011002451.1	2e-43	PREDICTED: uncharacterized protein LOC105109425
TrEMBL	A0A2C9V6Y4	4e-85	A0A2C9V6Y4_MANES; Uncharacterized protein
STRING	cassava4.1_028443m	2e-80	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13182	5	19

Link Out ? help Back to Top
Phytozome	Manes.10G123900.1.p